Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00095 ATGGAGGATTGGTGGGAGAATTGGTTCTCTGATATGGCTATGAACGGCGATAATAACTCCTCTTTTAATCAATGCCAAACGAATTCTTCTTGCTTGGAGGATATAAGCTTCAAGGGACAGTCTTCCAATGTAGTTTGCTGGGGATCTTTGCTGAGACAGGGCTACAACTGCGAGCAGTTTCAGCCTCATATTTCCTCTTTGAAAAGGACCCTAAGCTTTGAAGCCAGGGAGAGCCCAGGAACAAAGAGGGTCAGAAGCGCTTCAGAGACACGGGATCACATAATGTCGGAGAGAAAAAGGAGACAGGAAATGGCAGAGAGATTCATTGCACTTTCAGCTATTATCCCTGGCTTGAAGAAGATAGACAAGGCCTCTGTACTACGGGAAGCTGTTAAGTACGTGAAACAGCTACAGGAACGCATAGCAGTGCTGGAAGAAGAGAGTAAGATAAACAGTGCCACATCAATAATCTCTATTAAGAAATCTCAATCTCATCCTCATTCAGACTCATGTGATACAAACTCCTTGGGTTCCAATAAAGAGCTGCTCCCTGAAGTGGAAGCAATAGGCATAGAATCAGAGAAGGAACTACTTATTAGAATCCATTGTGAGAAACGAAAGGGCATCTTGCTCAAACTAATAGCCCAACTTGAAAATTTACATCTCTCGGTTGTCAGTAGCAGCGTACTGCCATTTGGAAAAAATGCTATCAACGTTACCATTATTGCTCAGATGGGTAAGGAATATGACATGACAGAGGGAGAATTGGTTGAAAACTTGAGACAGGATCTTTTGAAGTTATATGATATATAA 813 0.4219 MEDWWENWFSDMAMNGDNNSSFNQCQTNSSCLEDISFKGQSSNVVCWGSLLRQGYNCEQFQPHISSLKRTLSFEARESPGTKRVRSASETRDHIMSERKRRQEMAERFIALSAIIPGLKKIDKASVLREAVKYVKQLQERIAVLEEESKINSATSIISIKKSQSHPHSDSCDTNSLGSNKELLPEVEAIGIESEKELLIRIHCEKRKGILLKLIAQLENLHLSVVSSSVLPFGKNAINVTIIAQMGKEYDMTEGELVENLRQDLLKLYDI* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00095 270 SMART finulus 94 143 IPR011598 GO:0046983
Rops7g00095 270 Pfam Helix-loop-helix DNA-binding domain 93 138 IPR011598 GO:0046983
Rops7g00095 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 137 IPR011598 GO:0046983
Rops7g00095 270 MobiDBLite consensus disorder prediction 78 99 - -
Rops7g00095 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 150 IPR036638 GO:0046983
Rops7g00095 270 PANTHER BHLH TRANSCRIPTION FACTOR 21 266 - -
Rops7g00095 270 Gene3D - 87 157 IPR036638 GO:0046983
Rops7g00095 270 Coils Coil 127 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00095 Rops-Chr7 1396554 1398950 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00095 59 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.130 5.28e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g00095 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00095 - - cam:101501845 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00095 7 1396554 1398950 Rops4g02279 4 49650828 49653637 PCT