Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00093 ATGGACAAAATGACCGATTTTCATCGCAGAAACCACTTCTCCCACTTTCTAATGGAGCAGTCATGGGAAAATTGGCCTCTGCACATGGAAATGGGTGATGAGAAGGATCTGTTAGAGCAGTGCCACGGTAGTGATGATGAGGAGTTCCTGAGAGAAATCCTGCAGCAACCAGCTATGGTTTCTGAATGTGAAAGTCAATCTTTAGTCACCGCCCCCACGGTGGGTGCTAGTAGTAGTCTTTCCTCCAATGAGGTGGCAGGAGGGAAAAGGGTTTGCCCAAGGACTTTCATTCTGTCTTTCGATAACTCTACCATAATACCAGCTACACCAGAACCTTTCCTTGGTTATCAACGAAAGGGAGGAGGCCAGGGTACGCCCACTTCTAAATCTAATTCGCCTTTCTCATCGAAGAAACGGATCTTGGAAAATCTTAACTCTGAACCAAAGCCAAGGGCCACCCAAGGAGGGAAGAAGTTTAGAAGCGATTCTCAGAGTCTGGATCACATAATGGCAGAGAGAAAAAGGAGACAGGAACTCACTGAGAAATTCATATCACTTTCAGCCACTATTCCTGGCTTGAAGAAGACGGACAAGACCTCTATACTTGGCGAAGCCATCAGTTATGTGAAACAACTTAAAGAACGTGTGACGGAGCTAGAACAACAGCGAAACAAGAGATGCAAAGAATCAATGATAATCCTCAAGAAGACTGATATGTGTGGAAATGAAGATACCACCACCTCAAAGGAAACAAATTCCTACGATTGCTGTGAATTGCTCCCTGATGTTGAAGCAAGAGTGTTGGAGAATGAGGTACTCATTGAGATCCATTGTGAGAAGGAGAATGGCATTGAGCTCAAAATATTGGACCGGCTTGAAAATCTTCATCTGTATGTCACCGCCAGCAGTATATTGCCTTTTGGGAATTCAACTCTTGGCATTACTATTACTGCTCAGATGGGTGATGCGTACAGAATGACGGTGAATGAACTAGTGAAAGCTCTAAGGCAAGTGCTATTGTATTGA 1026 0.4425 MDKMTDFHRRNHFSHFLMEQSWENWPLHMEMGDEKDLLEQCHGSDDEEFLREILQQPAMVSECESQSLVTAPTVGASSSLSSNEVAGGKRVCPRTFILSFDNSTIIPATPEPFLGYQRKGGGQGTPTSKSNSPFSSKKRILENLNSEPKPRATQGGKKFRSDSQSLDHIMAERKRRQELTEKFISLSATIPGLKKTDKTSILGEAISYVKQLKERVTELEQQRNKRCKESMIILKKTDMCGNEDTTTSKETNSYDCCELLPDVEARVLENEVLIEIHCEKENGIELKILDRLENLHLYVTASSILPFGNSTLGITITAQMGDAYRMTVNELVKALRQVLLY* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00093 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Rops7g00093 341 PANTHER BHLH TRANSCRIPTION FACTOR 17 339 - -
Rops7g00093 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 227 IPR036638 GO:0046983
Rops7g00093 341 MobiDBLite consensus disorder prediction 113 164 - -
Rops7g00093 341 Gene3D - 157 229 IPR036638 GO:0046983
Rops7g00093 341 Pfam Helix-loop-helix DNA-binding domain 168 213 IPR011598 GO:0046983
Rops7g00093 341 SMART finulus 169 218 IPR011598 GO:0046983
Rops7g00093 341 Coils Coil 202 229 - -
Rops7g00093 341 MobiDBLite consensus disorder prediction 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00093 Rops-Chr7 1381131 1385852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00093 151 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.041 2.73e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g00093 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00093 - - aprc:113856039 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00093 7 1381131 1385852 Rops4g02280 4 49659667 49662956 PCT
Rops4g02279 4 49650828 49653637 Rops7g00093 7 1381131 1385852 PCT