Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00090 ATGCTCCACGGAGCACCCGAAACGAAAAACGGGTTCAGATTTGAACCTATTTCGGGTACAAACCACCTCATCAAGTTGTTCTCTCCATGTCATGCAGCACAAAGCAATGATCTTGAAGGAATCGCCGCCATTGTTGGAGAGCATGTCCTCTTCGGAGGCCAAGAAGATAAGAGCACCAAAGGGAGTGAAGACAAGACACCAAAGAAGGAAGGCACTGGGATCAACAACATTTCGGTGAGCAAGCGATACAGAGGAGTGAGGAAGAGACCATGGGGGAGGTGGTCGGCGGAGATACGTGACCGAATTGGTCGGTGCCGCCACTGGCTGGGCACCTTCGACACAGCGGAAGAGGCGGCGCGTGCGTATGACGCGGCGGCAAGGCGGTTGAGGGGTTCCAAAGCTCGAACCAACTTCGAGATACCCTCCTTTTTGCCGTCTCCTTCGTTCTCGGAAGTGAAAAATGTGAGTGGTGGAAAGCCTAAAGCCGAGCGAGGCAGTGGGAGAAAGTGCTCTGTGGTTACCTCTGTGGCTCAATTGTTCAGTGGGGTGCCTCCTGAAATTGAAAGAGGTCATGACATTGGTGACGACGAGAGAGGAATCAGAGGGTTTGGTAGTGTGGAGCTGGACTTGAAGCTGGGTGTTACCTTTGTTGGTAGAAACACTAGAAAAGAAATTAATGGATGA 684 0.5175 MLHGAPETKNGFRFEPISGTNHLIKLFSPCHAAQSNDLEGIAAIVGEHVLFGGQEDKSTKGSEDKTPKKEGTGINNISVSKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSFLPSPSFSEVKNVSGGKPKAERGSGRKCSVVTSVAQLFSGVPPEIERGHDIGDDERGIRGFGSVELDLKLGVTFVGRNTRKEING* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00090 227 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Rops7g00090 227 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Rops7g00090 227 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Rops7g00090 227 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Rops7g00090 227 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Rops7g00090 227 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Rops7g00090 227 MobiDBLite consensus disorder prediction 54 70 - -
Rops7g00090 227 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 62 159 - -
Rops7g00090 227 MobiDBLite consensus disorder prediction 54 75 - -
Rops7g00090 227 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Rops7g00090 227 SUPERFAMILY DNA-binding domain 82 139 IPR016177 GO:0003677
Rops7g00090 227 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00090 Rops-Chr7 1337466 1338149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00090 39 145 AP2-EREBP Transcription Factor Family AT1G80580 61.404 1.32e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops7g00090 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00090 - - cave:132188012 199.519