Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00088 ATGAATCTTATTGTTCTGTTCCTGCCCATTTGGGGGCTGAGCATTTCTCTTTCCTCAACAATTCTTCATGCTGCATCCTCCGTTTCTGTTTCAGCAAATGCACAAGCTGAATCTCCAGGAATTCAGGAGGTTAGAGTAGTGCACCACCAGAATTTGAATAAAAGTATTCTAGCAGCACTAATTGCTTGTTCTGCTCTTCTTGGTGGAGTCTTCCTATTCTTATTATATGTCTGGTTCCGTCGAAATAAACACTTAAGCAGCTCCAGTAGTAAAACCACAGGAACCGTGGAGGCTACGAAAGGAGAAGCCTTAAGCTCTGTTGATGCTAAACTTAACTACTCAAGGATGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGATTTTCAGTTGTTAGAGGCTGCAACAAACAGCTTTAGCACAAGTAATATTATGGCGGAGAGTGGTTCTAGAATTGTTTACAGAGCCCGTTTTGATGAACATTTCCAGGCAGCTGTGAAGAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATACGGCATCAGAACATCATAAAACTTCTGGGTTATTGTATTCATGGCGAATCGAGGTTTCTTGTTTATGAATTGATGGAGAATGGATCTCTTGAAACTCAAATGCATGGGCCTAATCGTGGATCATCTTTAACTTGGCATCTCCGGTTAAGAATTGCAATTGATGTTGCCAGAGCATTAGAATATCTCCACGAGCGCTGCAATCCTCCTATGGTTCACAGAGACCTAAAATCTTCTAATGTCCTTCTGGATTCTAACTTTAATGCCAAGCTATCAGATTTTGGACTTGCAATGGCTTCTGGAGGTCAACACAAGAACATGCAGATGTCAGGAACTCTGGGATACGTGGCACCTGAGTACATATCACATGGTAAACTAACTGATAAGAGCGATGTCTATGCTTTCGGGGTTGTCCTTCTGGAACTTCTAACCGGAAGGAAGCCCATGGAGAACATGTCCTCAACCCAATATCAATCCCTCGTATCATGGGCCATGCCTCAGCTAACTGACAGATTGAAGCTTCCAAGTATTCTGGATCCTGTTATCAGGGACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTGTGCGTGCAAGCAGAACCAAGTTACAGGCCACTAATAACAGATGTCCTGCACTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCACTCAGAGTTACTGAACCAATCCGCTTAGAGAACAACTCTCACTGA 1290 0.4295 MNLIVLFLPIWGLSISLSSTILHAASSVSVSANAQAESPGIQEVRVVHHQNLNKSILAALIACSALLGGVFLFLLYVWFRRNKHLSSSSSKTTGTVEATKGEALSSVDAKLNYSRMADKKSSVAIFDFQLLEAATNSFSTSNIMAESGSRIVYRARFDEHFQAAVKKADSDADREFENEVSWLSKIRHQNIIKLLGYCIHGESRFLVYELMENGSLETQMHGPNRGSSLTWHLRLRIAIDVARALEYLHERCNPPMVHRDLKSSNVLLDSNFNAKLSDFGLAMASGGQHKNMQMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMSSTQYQSLVSWAMPQLTDRLKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPIRLENNSH* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00088 429 ProSiteProfiles Protein kinase domain profile. 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g00088 429 FunFam probable receptor-like protein kinase At1g80640 211 409 - -
Rops7g00088 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Rops7g00088 429 Gene3D Phosphorylase Kinase; domain 1 99 210 - -
Rops7g00088 429 Pfam Protein tyrosine and serine/threonine kinase 158 346 IPR001245 GO:0004672|GO:0006468
Rops7g00088 429 SMART serkin_6 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g00088 429 PANTHER OS01G0750732 PROTEIN 31 407 - -
Rops7g00088 429 SUPERFAMILY Protein kinase-like (PK-like) 117 404 IPR011009 -
Rops7g00088 429 Gene3D Transferase(Phosphotransferase) domain 1 211 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00088 Rops-Chr7 1287266 1290735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00088 1 350 Receptor kinase-like Gene Family AT1G80640 45.405 3.94e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Rops7g00088 PK_Tyr_Ser-Thr 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00088 - - gmx:100811188 711.835