Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00084 ATGGCTAGACCACAACAACGCTATAGAGGTGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTATTTTGAAGACTAGAATATGGCTAGGAACGTTTGAAACAGCAGAAGATGCAGCAAAAGCGTATGACGAAGCAGCGAGGCTCATGTGTGGGGCAAAAGCACGCACCAATTTCCCATACAATCCCAATGAGGCAGAGTCATCTTCATCCAAGCTCCTCTCTGCAACTTTGACTGCAAAGCTACACAAGTGTCACATGGCCTCCCTTTCCCTTCAAATGGCCAAGCAGAAACCACCACAGAAAGAGCCTCAAGGATCCAACCCATTTGCCTCAACCAATGACATTGCAGGAACAAGCTCAGACACTGGCTTTAGATGGCCAGAGAAGAGACATGAGGAACAGCAGTGGCTAGAAGGCCAAGTTGAAGTCCCAGAGCAACAACAGTTTCAGCAAGTTCTTGAAGATGATCACATAGAACAGATGATACAGGAGTTGCTTGATTATGGGTCAATTGAGCTTAGTTCTGTTGGCTCTTCTTAA 555 0.4739 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAAKAYDEAARLMCGAKARTNFPYNPNEAESSSSKLLSATLTAKLHKCHMASLSLQMAKQKPPQKEPQGSNPFASTNDIAGTSSDTGFRWPEKRHEEQQWLEGQVEVPEQQQFQQVLEDDHIEQMIQELLDYGSIELSSVGSS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00084 184 MobiDBLite consensus disorder prediction 98 125 - -
Rops7g00084 184 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Rops7g00084 184 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Rops7g00084 184 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Rops7g00084 184 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 123 - -
Rops7g00084 184 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Rops7g00084 184 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Rops7g00084 184 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Rops7g00084 184 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Rops7g00084 184 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Rops7g00084 184 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Rops7g00084 184 MobiDBLite consensus disorder prediction 97 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00084 Rops-Chr7 1266286 1267292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00084 1 181 AP2-EREBP Transcription Factor Family AT5G25190 63.536 6.14e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops7g00084 AP2 8.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00084 - - gmx:100777851 296.589