Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00083 ATGGATACCCAAACAGAGAAGAGAAAGACAGAAAAGGAAGATAAACAACATCCACATGAGTCAGCTCCACGTCTTCTACTGGATCTAAGTCTCCCTAGTAAAGATTCAGGTGATGGCTCAAAGCCAGAGCTCAATCTCTTCAACTGTTTTGATCCAAATTTGTCCTTGAACTCCTCAGAATCTAATCATGGTAATGAATTGGAGCCCCGGATTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTTGGGGGACACCAGAATGCACACAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACATAGCTGGTTCTTCAGTTTCAGTAGATTTTGGACACAGGTACTCTAGTATGGCTTCTCTGCCTTTGCATGGCTCGTATCACCAATCACTTGGAATTCAGGTGCATTCTATGATCAACAAACCCTCTCAACAAACACCCATTTTTGGTTTGTCTCGTTCCCATGCCCAAAACCGGTGGCAGAAGCAGCCTATGTATTCACAATCGGTAATTGGAAATCTTGCATCAGGGAAGTTTCATGTTGGGGCAGAGACTGAATCATCCTTGGCTAGTGGCAGCCCAAGGTTAGGGAAGTTTTCTCCTAGGCTGGTACCAGAGGGATTTGGAGGTTACTGTTTGGGTAGTATTACCCATTTGAAGACCAAACAAGAGGAGTTGCAGAAACTTGACTTGTCCCTCAAACTCTAA 720 0.4389 MDTQTEKRKTEKEDKQHPHESAPRLLLDLSLPSKDSGDGSKPELNLFNCFDPNLSLNSSESNHGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHIAGSSVSVDFGHRYSSMASLPLHGSYHQSLGIQVHSMINKPSQQTPIFGLSRSHAQNRWQKQPMYSQSVIGNLASGKFHVGAETESSLASGSPRLGKFSPRLVPEGFGGYCLGSITHLKTKQEELQKLDLSLKL* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00083 239 SUPERFAMILY beta-beta-alpha zinc fingers 69 99 IPR036236 -
Rops7g00083 239 Coils Coil 223 239 - -
Rops7g00083 239 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Rops7g00083 239 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 239 IPR044246 GO:0009788
Rops7g00083 239 FunFam Zinc finger protein 2 51 118 - -
Rops7g00083 239 Gene3D Classic Zinc Finger 52 113 - -
Rops7g00083 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Rops7g00083 239 MobiDBLite consensus disorder prediction 1 22 - -
Rops7g00083 239 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00083 Rops-Chr7 1240005 1240724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00083 10 239 C2H2 Transcription Factor Family AT5G10970 41.803 6.17e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g00083 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00083 - - gmx:100812573 313.923