Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops7g00083 | ATGGATACCCAAACAGAGAAGAGAAAGACAGAAAAGGAAGATAAACAACATCCACATGAGTCAGCTCCACGTCTTCTACTGGATCTAAGTCTCCCTAGTAAAGATTCAGGTGATGGCTCAAAGCCAGAGCTCAATCTCTTCAACTGTTTTGATCCAAATTTGTCCTTGAACTCCTCAGAATCTAATCATGGTAATGAATTGGAGCCCCGGATTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTTGGGGGACACCAGAATGCACACAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACATAGCTGGTTCTTCAGTTTCAGTAGATTTTGGACACAGGTACTCTAGTATGGCTTCTCTGCCTTTGCATGGCTCGTATCACCAATCACTTGGAATTCAGGTGCATTCTATGATCAACAAACCCTCTCAACAAACACCCATTTTTGGTTTGTCTCGTTCCCATGCCCAAAACCGGTGGCAGAAGCAGCCTATGTATTCACAATCGGTAATTGGAAATCTTGCATCAGGGAAGTTTCATGTTGGGGCAGAGACTGAATCATCCTTGGCTAGTGGCAGCCCAAGGTTAGGGAAGTTTTCTCCTAGGCTGGTACCAGAGGGATTTGGAGGTTACTGTTTGGGTAGTATTACCCATTTGAAGACCAAACAAGAGGAGTTGCAGAAACTTGACTTGTCCCTCAAACTCTAA | 720 | 0.4389 | MDTQTEKRKTEKEDKQHPHESAPRLLLDLSLPSKDSGDGSKPELNLFNCFDPNLSLNSSESNHGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHIAGSSVSVDFGHRYSSMASLPLHGSYHQSLGIQVHSMINKPSQQTPIFGLSRSHAQNRWQKQPMYSQSVIGNLASGKFHVGAETESSLASGSPRLGKFSPRLVPEGFGGYCLGSITHLKTKQEELQKLDLSLKL* | 240 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops7g00083 | 239 | SUPERFAMILY | beta-beta-alpha zinc fingers | 69 | 99 | IPR036236 | - | |
Rops7g00083 | 239 | Coils | Coil | 223 | 239 | - | - | |
Rops7g00083 | 239 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 74 | 94 | IPR013087 | - | |
Rops7g00083 | 239 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 4 | 239 | IPR044246 | GO:0009788 | |
Rops7g00083 | 239 | FunFam | Zinc finger protein 2 | 51 | 118 | - | - | |
Rops7g00083 | 239 | Gene3D | Classic Zinc Finger | 52 | 113 | - | - | |
Rops7g00083 | 239 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 72 | 99 | IPR013087 | - | |
Rops7g00083 | 239 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Rops7g00083 | 239 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops7g00083 | Rops-Chr7 | 1240005 | 1240724 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops7g00083 | 10 | 239 | C2H2 Transcription Factor Family | AT5G10970 | 41.803 | 6.17e-40 | 137 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Rops7g00083 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops7g00083 | - | - | gmx:100812573 | 313.923 |