Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00080 ATGACCTTTGCAAAATCTCCATTTGATTTGTTAGATAGTAGTTTGAAGCACAGAGCTAGGGATTTCGGCCGCCCCCATCTTCAACAAGGAAGGAGAGTGATTCTTTCGAATTCAACAAGCAAAAATGTCAGGAATGAAAATTTTGGTAGAGAGGCTGTGTGTGTATTTTATAATGTCTATATGCGGTTATGTGGTGTCTTGAGTGAAGAAGGGGCTGTTGCAGCTGTTGCAGCGGAGCCAGTTGCTTCAATTCCAGGTGAGCCAATGGACATCATGACTGCCTTACAGCTTGTGCTGAGAAAGTCGCTGGCTTATGGTGGTCTTGCACGAGGTCTTCATGAAGGTGCAAAAGTGATTGAAAAGCATGCTGCACAGCTCTGCGTTCTTGCAGAGGATTGTGACCAACCTGATTATGTCAAATTGGTGAAAGCCCTTTGCGCAGAGCACAATGTTAGCCTGTTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCAGAGGGTAAAGCTAGGAAGGTAACTGGTTGCTCCTGCGTGGTTGTCAAGGATTTCGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCATGTGAAATCAAATTGA 627 0.4514 MTFAKSPFDLLDSSLKHRARDFGRPHLQQGRRVILSNSTSKNVRNENFGREAVCVFYNVYMRLCGVLSEEGAVAAVAAEPVASIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00080 208 PRINTS Ribosomal protein S12E family signature 98 111 IPR000530 GO:0003735|GO:0005840|GO:0006412
Rops7g00080 208 PRINTS Ribosomal protein S12E family signature 178 191 IPR000530 GO:0003735|GO:0005840|GO:0006412
Rops7g00080 208 PRINTS Ribosomal protein S12E family signature 112 128 IPR000530 GO:0003735|GO:0005840|GO:0006412
Rops7g00080 208 PRINTS Ribosomal protein S12E family signature 153 174 IPR000530 GO:0003735|GO:0005840|GO:0006412
Rops7g00080 208 FunFam 40S ribosomal protein S12 74 208 - -
Rops7g00080 208 PANTHER 40S RIBOSOMAL PROTEIN S12 84 207 - -
Rops7g00080 208 Gene3D - 76 208 IPR029064 -
Rops7g00080 208 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 94 187 IPR004038 -
Rops7g00080 208 SUPERFAMILY L30e-like 88 206 IPR029064 -
Rops7g00080 208 ProSitePatterns Ribosomal protein S12e signature. 94 112 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00080 Rops-Chr7 1182278 1185185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00080 84 208 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.200 6.80e-66 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00080 K02951 - gmx:100500093 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00080 7 1182278 1185185 Rops4g02317 4 50244633 50248201 PCT