LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops7g00066	ATGCCTTCAAGACCATTTCCTCCTACAAGTCTCAGTTTTTTCACCAAAACCAGGGTCCTGTTCATAGCACTCACCATTTCAGCTTCAGTTGTGATTTTCTGCTCAATCCTTTACTTCCTTTACCATCTGTGGCATTTTCTTGTACACAGAGCTAAGACTATCCCCTTTGATGCAAGTGCTCCCTTGAAGCTCCAAAGATTCTCATACAAAGATTTAAAGCAAGCCACCAATGGCTTTGACACTGCCAATGTCATTGGTAAAGGTGGCTCTGGCACTGTTTTCAGGGGAATACTTAAAGATGGGAAATTGATTGCTATCAAGCGCTTGGATGCGTTGTCTTTGCAGACAGAACGAGAGTTTCAAAATGAGTTGCAGATTCTTGGAGGGTTAAGATCACCTTTCCATGTGACCCTTTTGGGCTATTGTGTTGAAAAGAACAAAAGAGTGTTGGTGTATGAGTATATGCCCAACAGAAGCTTGCAGGAGTCCCTCTTTGGAGATGGGTGTTTGAGTTTGAGTTGGGAGAGAAGGTTTAGCATAATAATGGATGTTGCTAGAGCATTGGAGTTCTTGCACCTTGGATGTGATCCACCAGTGATCCATGGTGATATCAAGCCAAGTAATGTTCTGCTTGATGCTGAGTACCGCGGGAAGATCTCAGACTTTGGGTTGTCAAGGATTAAGGTGGAGGGTGAATTTGGTATGGACTTGTTTAGCCAGGACCTTGGGAAGAGCCAGGAGCTATGGAAAAGCCAAGAGCTTTCAGGTAATTTAACAGCTGAAACTCCAGCTATTGGTACTCCAGTTGAGAGTGTTAATGAAGTAGATTTTGCTTTAGCTTTGCAAGCCTCTTCTTCATCCAAAAATAGTAAGGCCTGTTTTAATGCTGGAGCTTTGAACTTGAATTCTTCGAATTATAATGCCAATATTGCCAGTGAAAGTGAAATTATGAGTGTAAATGCAAAGGGTAAGGAAATTTCAACTTTGGATATAGGAGGGGATGACTGGAATAATAGGTTTGTTCCTTATGATGATGAGTTTTCTAGCATAGATTATAGTAAGGAGTTGACTGGTAATGCTTCTTTGGTGGATGATGAGAAGGCAAATGGGAAACAATGGGGAAAGGACTGGTGGTGGAAACAGGATGGAAGCGGTGAATTATGTAGTAAGGATTATGTCATGGAGTGGATAGGGAGTCAGATTTGTCCATCAAACGCTGACTGGGATGATGGTAAGAACAATATTCACGAGAAAGAAGAGTTGGGAAATTCAAGACCAATAGATAAAGCCAATGATGCAAATGGACCCCAATCAAGGGTGTCTTGGATAGGAAATACAGATTATGGGGTTGATAAGAAAGAATCAAAGGGAAAGAAAAACCGCAAGAAGAGTCACAGAAAGATGCAAGAGTGGTGGAAAGAAGAGCATCTTGCTGAGTTAAGCAAGAAGACTAGTAAGTTGAAAAATCTTCAAACTAAGTGGAAGAAAGGCTTGAAAGTGCCCCATTTTGATTTGGGAAGAAGATTTTATCTTTGCCAACGCAAGAACTATGGAGAGGAGGGTCCATATGAGTGTGATCAAAACGGGGAGTTTAGCTTCAGAAGAGGTTGGAAGAAAAAAAGTACTCGTTCCATGGGAAGTGACATGTGGAGTGGAGATCTTTTCAGCCGTGAGCTCAGCTGCACAACTAGCATGAGAGGGACATTGTGTTATGTGGCACCAGAATATGGAGGGTGTGGGTTCTTAATGGAGAAAGCTGACATTTACAGTTTTGGAGTTTTGATTCTTGTAATTGTGTCAGGTAGAAGACCATTACATGTTCTTGCATCCCCCATGAAGCTAGAGAAAGCTAACTTAATAAGCTGGTGCAAACACTTGGCTCAGGCTGGTAACATTTTAGAACTAGTAGATGAGAGATTGAAAGAAGATTACAACAAGGATCAAGCAAGTCTGTGTATCAACTTGGCACTCACTTGCTTACAGAAAATTCCAGAGTTGCGGCCAGATATTGGAGACATTGTTAAGATTTTGAAAGGGGAGATGAACCTTCCACCACTTCCATTCGAGTTCTCCCCTTCTCCACCTTCCAAATTATACAGAAGTTCAAGGAGAAAACCGAAGGGCGCTACTGAATAG	2136	0.4181	MPSRPFPPTSLSFFTKTRVLFIALTISASVVIFCSILYFLYHLWHFLVHRAKTIPFDASAPLKLQRFSYKDLKQATNGFDTANVIGKGGSGTVFRGILKDGKLIAIKRLDALSLQTEREFQNELQILGGLRSPFHVTLLGYCVEKNKRVLVYEYMPNRSLQESLFGDGCLSLSWERRFSIIMDVARALEFLHLGCDPPVIHGDIKPSNVLLDAEYRGKISDFGLSRIKVEGEFGMDLFSQDLGKSQELWKSQELSGNLTAETPAIGTPVESVNEVDFALALQASSSSKNSKACFNAGALNLNSSNYNANIASESEIMSVNAKGKEISTLDIGGDDWNNRFVPYDDEFSSIDYSKELTGNASLVDDEKANGKQWGKDWWWKQDGSGELCSKDYVMEWIGSQICPSNADWDDGKNNIHEKEELGNSRPIDKANDANGPQSRVSWIGNTDYGVDKKESKGKKNRKKSHRKMQEWWKEEHLAELSKKTSKLKNLQTKWKKGLKVPHFDLGRRFYLCQRKNYGEEGPYECDQNGEFSFRRGWKKKSTRSMGSDMWSGDLFSRELSCTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCKHLAQAGNILELVDERLKEDYNKDQASLCINLALTCLQKIPELRPDIGDIVKILKGEMNLPPLPFEFSPSPPSKLYRSSRRKPKGATE*	712

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops7g00066	711	SUPERFAMILY	Protein kinase-like (PK-like)	59	696	IPR011009	-
	Rops7g00066	711	MobiDBLite	consensus disorder prediction	688	711	-	-
	Rops7g00066	711	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	199	211	IPR008271	GO:0004672\|GO:0006468
	Rops7g00066	711	MobiDBLite	consensus disorder prediction	407	467	-	-
	Rops7g00066	711	Pfam	Protein kinase domain	81	230	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops7g00066	711	MobiDBLite	consensus disorder prediction	430	444	-	-
	Rops7g00066	711	FunFam	Receptor-like serine/threonine-protein kinase At4g25390	534	683	-	-
	Rops7g00066	711	PANTHER	OS07G0586332 PROTEIN	13	705	IPR044576	-
	Rops7g00066	711	Coils	Coil	473	493	-	-
	Rops7g00066	711	ProSitePatterns	Protein kinases ATP-binding region signature.	85	107	IPR017441	GO:0005524
	Rops7g00066	711	SMART	serkin_6	79	676	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops7g00066	711	FunFam	putative receptor-like protein kinase At1g80870	155	266	-	-
	Rops7g00066	711	FunFam	Receptor-like serine/threonine-protein kinase At4g25390	48	154	-	-
	Rops7g00066	711	Gene3D	Transferase(Phosphotransferase) domain 1	538	683	-	-
	Rops7g00066	711	Gene3D	Transferase(Phosphotransferase) domain 1	155	264	-	-
	Rops7g00066	711	MobiDBLite	consensus disorder prediction	410	426	-	-
	Rops7g00066	711	ProSiteProfiles	Protein kinase domain profile.	79	686	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops7g00066	711	Gene3D	Phosphorylase Kinase; domain 1	48	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops7g00066	Rops-Chr7	936054	938846	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops7g00066	545	677	Receptor kinase-like Gene Family	AT3G58690	31.343	3.05e-13	70.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Rops7g00066		Pkinase	9.2e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops7g00066	-		-	gmx:100807432	1200.27