Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00044 ATGAATGGTTCCCAAAAATCCTCAATTTCGGGCCACCCATTCAATTCTCTCGACAACCTCAACAACGAGCTCAGGCACTGCCGTAGCTGCAGCACCGACTATGGCCTCTTACGCTTAGCCTCCAAAGCTGACCCCTCTCACTTTGAAGACCATGACAACAAGGAAAACGCCAATGGGTCTTCTTCTCTCCCTATCCCTTTCTCAAAGTCAAAGTCTTTGTCCACAGACAGGATTCGCAAGCCTACCTCCCTCCAACACTGCATGCAAATGAACGACCCTCTTGATTCCCACCATTCCAACTCTTCGAATATTTGGGACTACTCTGACTCTGAAGCAGCTCCTGCTTCCTCCTGGTCCACTTTGCCCAATAAGTCTTTGATATGTAGACCCTTGCCTATTGATATTGGAAGGTGTACATGTGTTATTGTGAAGGAAGCAACGCCACAGGGACTGTCTGGGGGAACTTTCTTCTCTCTTTATACCTATGAAGGTCAGGGACGGCAGAATAGGAAACTTGCTGTGGCCCAACATAAGTGGCGAAATGGGAGGTCTCAGTTCACCATAGCTCAGAATGTAAAAGGACTATTGTCCAATTCGGATGATAGTTTCCTTGGGACTGTAACAGCTAACCTCATGGGCTCAAAATACAACATTTGGGACCAGGGATATCGTCATAATTCTCATAGTAAAAAGCCAAAGACACCTCTTGCTGTTGTGAAGTATATACCTACAGTAGCAACATGTACAGGGAGTCACAGAAGCATGAAAGCATTTATACCCAAGCATCAATCTATGTCACTTAAGAACATGTCCCAGGTACAACACATTAAAGGATTGCCAATGAATTGGGAGGGAAAATTGGTCAAAGTCCATCAACTATTCTCAAGGGTTCCACTGTACAACAAGATATCCAAGCAATTTGAGCTTGACTTTAGAGATAAAGGAAGGGCAGGACTTAGAATCCAAAGATCGGTGAAAAATTTTCAGCTGACTTTAGAGGAGAATGGGAAGCAGACGATCCTGCAGCTAGGAAGGGTGGGAAAATCAAAATTCGTTATGGATTACAGATATCCTTTGACAGGTTACCAAGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGCTGCACGGTATAG 1143 0.4444 MNGSQKSSISGHPFNSLDNLNNELRHCRSCSTDYGLLRLASKADPSHFEDHDNKENANGSSSLPIPFSKSKSLSTDRIRKPTSLQHCMQMNDPLDSHHSNSSNIWDYSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEATPQGLSGGTFFSLYTYEGQGRQNRKLAVAQHKWRNGRSQFTIAQNVKGLLSNSDDSFLGTVTANLMGSKYNIWDQGYRHNSHSKKPKTPLAVVKYIPTVATCTGSHRSMKAFIPKHQSMSLKNMSQVQHIKGLPMNWEGKLVKVHQLFSRVPLYNKISKQFELDFRDKGRAGLRIQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCICLASIDAKLCCTV* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00044 380 Pfam Tub family 129 373 IPR000007 -
Rops7g00044 380 MobiDBLite consensus disorder prediction 45 75 - -
Rops7g00044 380 SUPERFAMILY Tubby C-terminal domain-like 115 379 IPR025659 -
Rops7g00044 380 Gene3D Tubby Protein; Chain A 123 373 IPR025659 -
Rops7g00044 380 PANTHER TUBBY-RELATED 96 377 - -
Rops7g00044 380 MobiDBLite consensus disorder prediction 57 75 - -
Rops7g00044 380 PRINTS Tubby superfamily signature 357 379 IPR000007 -
Rops7g00044 380 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Rops7g00044 380 PRINTS Tubby superfamily signature 203 227 IPR000007 -
Rops7g00044 380 PRINTS Tubby superfamily signature 336 355 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00044 Rops-Chr7 679612 682627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00044 55 273 TUB Transcription Factor Family AT1G16070 52.137 3.46e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops7g00044 Tub 9.1e-42 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00044 K19600 - gmx:100803500 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00044 7 679612 682627 Rops7g00044 7 679612 682627 ECH