Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00041 ATGAAGCTTACTGTGAAAACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAACCCTCCGATTCTATTATGGCAGTCAAAAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCAGATAATAAGGTCTCTGAAGATGGCTTTCTTGTCGTCATGCTTAGTAAGAGTAAAACCTTGGGATCTGCTGGCACTTCATCGACTCAGCCTGCTAGCAATCCACCTACAACTGTATCAACACCAAATACCACACCTACAGTACAAACTCAGTCTGCAAACAACCTTGCATCTGCCACAGATGTCACAACTACAAATGTGACTACAGATTCTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAGCTGGGACAGAGATACAGTTAGTCGTGCTCTTCGAGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAACAGCTGAAGTTGCTGTACCAGCTGCTGGTCAGACAACCGAAACAGGTGGAGTCACTGCTGGAGCTGTTTCTGGGGCCCCTAACTCATCACCCTTGAATATGTTTCCACAGGAGACATTATCTGGTGCTGGTGCTGGAGCTGGAGCTGGAACTCTTGACTTCCTTAGGAACAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTACTTCAGGAGCTTGGGAAGCAGAATCCCAATCTCTTGAGACTAATTGATGAGCATCATGCCGAGTTTCTCCAGTTGATAAATGAACCCGTTGAGGGTTCTGAAGGTGATATCTTTGATCAGCCTGAGCAAGACATGCCTCATGCAATCAATGTGACACCAGCTGAGCAGGAGGCGATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCGGTCATAGAAGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCAGGGGATTTTGAGGATTAA 1098 0.4463 MKLTVKTLKGSHFEIRVQPSDSIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGTSSTQPASNPPTTVSTPNTTPTVQTQSANNLASATDVTTTNVTTDSYGQAASNLVAGSNLEQTIQQIMDMGGGSWDRDTVSRALRAAYNNPERAVDYLYSGIPETAEVAVPAAGQTTETGGVTAGAVSGAPNSSPLNMFPQETLSGAGAGAGAGTLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPNLLRLIDEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00041 365 SUPERFAMILY XPC-binding domain 236 303 IPR036353 GO:0003684|GO:0006289|GO:0043161
Rops7g00041 365 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Rops7g00041 365 SUPERFAMILY UBA-like 300 362 IPR009060 GO:0005515
Rops7g00041 365 Gene3D - 1 80 - -
Rops7g00041 365 FunFam UV excision repair protein RAD23 B 230 296 - -
Rops7g00041 365 FunFam UV excision repair protein RAD23 homolog 312 360 - -
Rops7g00041 365 SMART CBM 238 281 IPR006636 -
Rops7g00041 365 PRINTS DNA repair protein Rad23 signature 347 362 IPR004806 GO:0006289
Rops7g00041 365 PRINTS DNA repair protein Rad23 signature 315 331 IPR004806 GO:0006289
Rops7g00041 365 PRINTS DNA repair protein Rad23 signature 266 288 IPR004806 GO:0006289
Rops7g00041 365 PRINTS DNA repair protein Rad23 signature 332 346 IPR004806 GO:0006289
Rops7g00041 365 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Rops7g00041 365 FunFam UV excision repair protein RAD23 1 80 - -
Rops7g00041 365 CDD Ubl_Rad23 1 74 - -
Rops7g00041 365 Pfam UBA/TS-N domain 144 182 IPR015940 -
Rops7g00041 365 Pfam UBA/TS-N domain 321 356 IPR015940 -
Rops7g00041 365 SUPERFAMILY UBA-like 141 192 IPR009060 GO:0005515
Rops7g00041 365 SMART uba_6 144 184 IPR015940 -
Rops7g00041 365 SMART uba_6 321 358 IPR015940 -
Rops7g00041 365 Pfam XPC-binding domain 240 295 IPR015360 GO:0003684|GO:0006289|GO:0043161
Rops7g00041 365 MobiDBLite consensus disorder prediction 80 112 - -
Rops7g00041 365 SMART ubq_7 1 75 IPR000626 GO:0005515
Rops7g00041 365 CDD UBA1_Rad23_plant 138 187 - -
Rops7g00041 365 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Rops7g00041 365 Gene3D - 137 187 - -
Rops7g00041 365 Gene3D - 312 360 - -
Rops7g00041 365 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 319 359 IPR015940 -
Rops7g00041 365 NCBIfam UV excision repair protein Rad23 1 364 IPR004806 GO:0006289
Rops7g00041 365 Gene3D - 230 296 IPR036353 GO:0003684|GO:0006289|GO:0043161
Rops7g00041 365 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Rops7g00041 365 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 354 - -
Rops7g00041 365 FunFam UV excision repair protein RAD23 homolog 137 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00041 Rops-Chr7 663872 672054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00041 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.08e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00041 K10839 - gmx:100804038 602.438