Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00035 ATGCGAAAAAGAAAATGGAAAGTCAAGGTTCTTTCTGAATTCTGTCCTGCCAATCCATCGCTTTTAGGGCTAAATATAGGACCGGGTGCAGAAGTAAAGCTAAGACTACGGAGGCCTAACCGTGAGTGGGACTTCTTCCCATATGAGCAGATTCTTGATACTATGTTGCACGAGCTTTGCCATAATGAACATGGTCCCCACAATGCTCAGTTTTATAACCTTTTGGATGAAATCAGGAAGGAATGTGAAGAACTAATGGTCAAAGGGATCAATGGCACTGGGAAAGGATTTGACCTTTCTGGGAGACGTTTGGGAGGGATGTCTCGGCAACCACCTTTGTCATCACTTCGCCAGACTGCATTGGCTGCTGCTGAAAGCAGAACACGACATAGAGCTTTGCTGCCTTCTGGACCACAATGTTTAGGTGGTGATACCAATATTAAGTCAGCTCTGAGTCCAATACAAGCTGCTGCCATGGCTGCTGAAAGGAGACTGCATGATGACATGTGGTGTGGGTCACAGTCTGCAGGGGGTGACACTTATATACAGGAGAATGCAAGTTCTAGTGGACCTTCTGAGAGATCTATTCAAACTTCGGGTATTCAATCTGCAGTGGCCAAGGAAACAATTTGGGGGGCAAATTGGCAGTGCAATACTTGCACTTTGTTAAATAAGCCATTGGCATTGCTATGCGAAGCCTGTGGAACAGAGAAGCAGAAAGATGTTTCCAAGTTCAAAGTTTGGTCCTGCAAATTTTGTACTCTAGAAAACAGTATTGAGCTAGATAGATGCTTAGCTTGCGGTGTGACTTCCCACTTGCCGGCCATTCGACGCCACCCAGTTTTTCTTCCTCTCTCTCACTTCTTGAAGATTGAGCAAGGGTCTCTGCTTCTGCTTCTGCTGGTGGTGTGGGCTCCACCTCTCTTCCCTCATCATCAGATATTTTTGCACACAATAGACCGACCTGGATCCCACCTTCCTTTCAAATTCCTAGCTCTGATGGGTTCCGTATCTGGAGAGGAGAAGATGGATCTTGATCTTGATCTTGATGAGCAGATTCCCTTAAGCACTTCCTCCTCTGCTTCCAAAGTACATCCTTTCAGTTTCGAGACCACAGTTGGTTTGCCCAAATCATCTTTCTTTAACCTCTTACGGGCGAGACGCATCAGAAGGAGTATCTATGTAGTCTTAATTAAAGCCAAGATCAACATCTTGTTACCCTTTGGTCCATTGGCTATATTCCTTCATTATCTCACCGGAAAGCATGGATGGGTGTTCTTCTTCACCTTGGTGGGTATTACTCCTCTGGCAGAACGTCTGGGTTATGCTACCGAGCAGCTTGCGTTCTACACAGGACCAACAGTTGGAGGTCTGCTTAATGCCACATTTGGCAATGCAACTGAGATGATTATATCAATTTATGCATTGAAAAGCGGTATGATTAGGGTTGTTCAGCAATCTTTACTTGGTTCGATCTTGTCCAATATGCTTCTAGTTCTTGGGTGTGCATTCTTTACTGGTGGGATTGTCCACCACCAAAAAGTTCAGGTTTTCAATAAGGCAGCTGCTGTTGTCAATTCTGGGTTGCTGTTGATGGCTGTAATGGGAATATTATTTCCTGCTGTGCTTCACTTTACTCGTTCAGAGGCTCATCTTGGGAAGTCAGTGTTATCTCTATCAAGATTTAGCAGCTGTATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAGCAAAATTCTTATAGTCCAGTTGATGAGGAAGGAGATAGACGGGAAGATTCCGACGAGGAGGAAGAACTTGAATTAACTCAATGGGAAGCGATAATCTGGCTTGCTATTTTGACAGCATGGGTATCTGTATTGTCGGGATACCTTGTAGATGCCATAGAGGGAGCATCTGAGTCATTGAATATGTCAATGGCTTTTATTAGTGTCATCTTGCTTCCAATCGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCGTTAAGGACAAGCTTGATATCACAATTGGAGTTGCTGTTGGATCATCTACACAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATCACTGTGCTGGTGGTTGCATTTATGATGCAGGAAGGAACCTCCAATTATTTTAAAGGCTTGATGCTTATTCTATGCTATCTTATAGTTGCTGCCAGTTTTTTCGTACATGTAGACCCTAAAAGTGGTGATGACTAA 2298 0.4373 MRKRKWKVKVLSEFCPANPSLLGLNIGPGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEHGPHNAQFYNLLDEIRKECEELMVKGINGTGKGFDLSGRRLGGMSRQPPLSSLRQTALAAAESRTRHRALLPSGPQCLGGDTNIKSALSPIQAAAMAAERRLHDDMWCGSQSAGGDTYIQENASSSGPSERSIQTSGIQSAVAKETIWGANWQCNTCTLLNKPLALLCEACGTEKQKDVSKFKVWSCKFCTLENSIELDRCLACGVTSHLPAIRRHPVFLPLSHFLKIEQGSLLLLLLVVWAPPLFPHHQIFLHTIDRPGSHLPFKFLALMGSVSGEEKMDLDLDLDEQIPLSTSSSASKVHPFSFETTVGLPKSSFFNLLRARRIRRSIYVVLIKAKINILLPFGPLAIFLHYLTGKHGWVFFFTLVGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHQKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTRSEAHLGKSVLSLSRFSSCIMLVAYASYLFFQLRSQQNSYSPVDEEGDRREDSDEEEELELTQWEAIIWLAILTAWVSVLSGYLVDAIEGASESLNMSMAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00035 765 ProSitePatterns Zinc finger RanBP2-type signature. 215 234 IPR001876 -
Rops7g00035 765 SUPERFAMILY Ran binding protein zinc finger-like 212 238 IPR036443 -
Rops7g00035 765 Gene3D - 211 245 - -
Rops7g00035 765 ProSiteProfiles Zinc finger RanBP2 type profile. 207 240 IPR001876 -
Rops7g00035 765 Pfam Sodium/calcium exchanger protein 613 752 IPR004837 GO:0016020|GO:0055085
Rops7g00035 765 Pfam Sodium/calcium exchanger protein 424 579 IPR004837 GO:0016020|GO:0055085
Rops7g00035 765 Pfam Zn-finger in Ran binding protein and others 215 239 IPR001876 -
Rops7g00035 765 SMART zf_4 213 237 IPR001876 -
Rops7g00035 765 SMART zf_4 246 270 IPR001876 -
Rops7g00035 765 NCBIfam calcium/proton exchanger 395 755 - -
Rops7g00035 765 ProSitePatterns Zinc finger RanBP2-type signature. 248 267 IPR001876 -
Rops7g00035 765 Gene3D - 453 589 IPR044880 -
Rops7g00035 765 Gene3D - 600 756 IPR044880 -
Rops7g00035 765 ProSiteProfiles WLM domain profile. 1 166 IPR013536 -
Rops7g00035 765 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 372 760 IPR004713 GO:0006812|GO:0008324|GO:0016020
Rops7g00035 765 FunFam Vacuolar cation/proton exchanger 600 756 - -
Rops7g00035 765 Pfam WLM domain 1 165 IPR013536 -
Rops7g00035 765 NCBIfam calcium/proton exchanger 405 755 IPR004798 GO:0006816|GO:0015369
Rops7g00035 765 FunFam Vacuolar cation/proton exchanger 453 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00035 Rops-Chr7 581832 597658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00035 376 760 Antiporters AT3G13320 74.870 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00035 K07300 - gmx:100792408 684.871