Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00026 ATGCGACCACAAACGCAGAAAAAAAGGAAAAAGAATAGAGAAGAAGCGATAAGAAAGAGACAGCAGTGCAGGTATTACGAAGTGAAAGAGAAAATGGGTCGTGGAAAGATACCTATGGAACTCATTCCGAAGGAAAAAGCTCGGAAGACAACATATCAGAAGAGAAAAAACGGGTTGATTAAGAAGGTTTATGAGTTTGCCACTCTGTGTGGGGTTGATGTTTGCGCAATTATCTATGCCCCCAACTTTGATGGTCAAGGAATTGCTGAACCTGAAACATGGCCTCAAGACCCAAGAGAGGTACATCGCATCATTCAAAAGTACCATAACACAACTATTGACAGGCGTCCCAAGATCTATGATGTGCAAGAGTATTACAAGGATAGGATGAAAAAAGTTGACGCTGAGATTTCCAAAGTGCGCAAAGAGAGGCTCAAGATCATGTACCCAACATGGGATGACTCTTTCAATGCTCTTGGAGAGGAACAACTCAGGATCTTTGTTAGCATGCTGGATGCTAAGCTTGACGCTTGTAGTCAAAAGTTGAATATGCTAAAAGGAGATCCTAAGGGAAAAGCAGTAGCAGAATCAGAATCAGACAATGCTGAGACACTTAGTGCATACTTGGCCTCAATTCCAAGTAGCCACCTCAATCTCATGGAGAACATGCCTCAAGCACAACTTTTTCCTCCCCCTTTGAATATGAAGTCAGTCAGTGATGTGAACCAGTTTGCATTTTGCCCCTCTCAGCTTGGCCAGAGTTCTCAACCTTCCAGGCTTCAGTTTGGTCAGAATTATATGCAATTGATGGAAAAAAATGGAATGGTGGATTGGGTTAATCAAGCTGGAGTTGTTACTTATGATCCCAAAACTGATATGCTAAACCAGGATGGAGCTGAAAATAATCAAAACTCCTCACCATTCTATTACAATGGAAATATACAAACGATGCAGCCACATACTATTGCTTTGCAGACTCTTCCTCCTCAAAACTCGCCGTATGAAGCAGCTTTCCAGACTCAATCAGATCTACCACCTGAGTATCGACTTAATGGATTCTACGATACAAATATGCTTCAAGCTCATATTTTCAACTACATGCATGGAAAGAAGTAG 1116 0.4158 MRPQTQKKRKKNREEAIRKRQQCRYYEVKEKMGRGKIPMELIPKEKARKTTYQKRKNGLIKKVYEFATLCGVDVCAIIYAPNFDGQGIAEPETWPQDPREVHRIIQKYHNTTIDRRPKIYDVQEYYKDRMKKVDAEISKVRKERLKIMYPTWDDSFNALGEEQLRIFVSMLDAKLDACSQKLNMLKGDPKGKAVAESESDNAETLSAYLASIPSSHLNLMENMPQAQLFPPPLNMKSVSDVNQFAFCPSQLGQSSQPSRLQFGQNYMQLMEKNGMVDWVNQAGVVTYDPKTDMLNQDGAENNQNSSPFYYNGNIQTMQPHTIALQTLPPQNSPYEAAFQTQSDLPPEYRLNGFYDTNMLQAHIFNYMHGKK* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00026 371 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 82 IPR002100 GO:0003677|GO:0046983
Rops7g00026 371 SMART madsneu2 32 91 IPR002100 GO:0003677|GO:0046983
Rops7g00026 371 CDD MADS_SRF_like 33 109 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops7g00026 371 PRINTS MADS domain signature 54 69 IPR002100 GO:0003677|GO:0046983
Rops7g00026 371 PRINTS MADS domain signature 69 90 IPR002100 GO:0003677|GO:0046983
Rops7g00026 371 PRINTS MADS domain signature 34 54 IPR002100 GO:0003677|GO:0046983
Rops7g00026 371 SUPERFAMILY SRF-like 33 130 IPR036879 GO:0003677|GO:0046983
Rops7g00026 371 ProSiteProfiles MADS-box domain profile. 32 92 IPR002100 GO:0003677|GO:0046983
Rops7g00026 371 PANTHER SERUM RESPONSE FACTOR HOMOLOG 32 226 - -
Rops7g00026 371 Gene3D - 44 133 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00026 Rops-Chr7 472064 477164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00026 32 274 Type I MADS-box Gene Family AT5G55690 32.661 3.39e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops7g00026 SRF-TF 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00026 - - ccaj:109800518 404.06