Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00019 ATGCAATTAGCGTCAAACAATGACACCGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCAGCATCTTCATTCCGGAGAGTCCTCGTTTTCCTGTGAAATTATTCCTGCTGGGGGGGATTTCACTGCTGCCAACGATGATGGTGGTGATGATTTACAGAATGTTCATGTTGATGACACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGGATATGCCTTGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACGCAGAAGTATGTCCACAGGTCATGTCTCGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTGCGTGCAAATGTCCCACCAGATAGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCCAGGGATCATGCATTCATTTTCATAGTCGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTTTACAAATTCTATGGAGATGAACTGAGAGAGATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGCTTGCTCTATGGCTTCTTCATAGCCATAATATGTGGCCAAAGAATTAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACAAAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAGTTGATTATCCTTGTACGGACCTATTTATAGCAATTTATAGAAGCTTGTCTCCATGGTCTCTCTTATATTTGTATATCACGTTAGTCTTGTTCAGCGTGATGTCCCGTTATTATGGCTGTTGGGGCACCAAAAAAGTCCACAGCCACAAGGGCGTGAAAATCACTCTTTTGAATCAATGTTGTATGGTGGAGTATAAAGTAAAAACGTGGAGATCTTACAGACCTGTGGCTGCTGCATCGAGATATTTGTAG 972 0.4208 MQLASNNDTEECSESEPILNQHLHSGESSFSCEIIPAGGDFTAANDDGGDDLQNVHVDDTCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIVVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKPCDRTKDVGPLLVDYPCTDLFIAIYRSLSPWSLLYLYITLVLFSVMSRYYGCWGTKKVHSHKGVKITLLNQCCMVEYKVKTWRSYRPVAAASRYL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00019 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 123 IPR013083 -
Rops7g00019 323 SMART ringv_2 70 119 IPR011016 GO:0008270
Rops7g00019 323 Pfam RING-variant domain 71 118 IPR011016 GO:0008270
Rops7g00019 323 SUPERFAMILY RING/U-box 66 122 - -
Rops7g00019 323 CDD RING_CH-C4HC3_MARCH 71 119 - -
Rops7g00019 323 ProSiteProfiles Zinc finger RING-CH-type profile. 63 125 IPR011016 GO:0008270
Rops7g00019 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 191 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00019 Rops-Chr7 400854 404674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00019 1 217 C3H Transcription Factor Family AT1G50440 60.369 4.97e-89 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00019 - - gmx:100789593 427.557