Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03642 ATGGCTTTAGAGCAGCAAGTATCGCTGGGTCAGAATACGAACGTAGTGGACGGCGAAGTAGACGGAAACACCAACGGCGTGGATGGTCGGCCGGCGTCTACGGACGGCGGAGATGATGGAGGCAAAGCACCGAGACTGCCTCGATGGACTAGACAGGAGATTCTGGTTCTGATACAGGGAAAGAGAGACGCAGAGAATAAGTTTAGGAGGGGCCGCACCGCGGGATTGCCATTCGGGTCGGGTCAGGTGGAGCCGAAATGGGCATCGGTCTCCTCGTACTGCCGAAAGCATGGAGTGAACCGGGGTCCTGTTCAGTGCCGAAAAAGGTGGAGCAATTTGGCCGGAGACTACAAAAAGATCAAAGAATGGGAGTCTCAGATAAGGGAGGAGACGGAGTCGTTTTGGGTCATGAGAAACGATTTAAGGAGAGAGAGGAAATTGCCCGGTTTTTTTGACAAGGAGGTCTATGATATTCTTGATTCAGGGTCGCAGGCGCCGGCGTTAACTCTAGCTCTGCCGTCACCTGTAACGGAGCCGGTGGGCAAGGGCAAAGGTAAGGACATGGACAAGGACAGCAAAAGAGTGGCGGAAGAAGCCGAGGAGCCTCACCTGTATGATAGTAATCGGAGCACTGCTGGTGAGGATGGCTTGTTCTCAGATTTTGAACAAGAAGATGTGGGTGCCAGTCCTGAGAAGAAGGATGTTTTGGGTTCCCCAAAGGACATTCCTGCTCCTATTCCTATCTCAGAGAAGCAATATCAACCACTCCTCCGTGGCTGCCAAGGTGAAGGTGTGACTAACGAGAAACAGCCAACTTCAAATCCAGAAATGGGTTCGACATCTCAAGGAGAACGGAAAAGGAAGCGGTTGGCAACAGATGGAGAGGAGGAAGCTTTGCAATATCAATTAATTGATGTCTTAGAAAGAAATGGCAAGATGCTAAGTGCTCAACTTGAAGCGCAAAATATAAATTTCCAGTTGGATCGTGAGCAACGGAAAGACCACGCAAGTAACTTGGTTGCTGTACTTGATAAGCTTGCAGATGCTCTAGGGAGAATCGCTGATAAATTGTAG 1074 0.5009 MALEQQVSLGQNTNVVDGEVDGNTNGVDGRPASTDGGDDGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLPFGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREETESFWVMRNDLRRERKLPGFFDKEVYDILDSGSQAPALTLALPSPVTEPVGKGKGKDMDKDSKRVAEEAEEPHLYDSNRSTAGEDGLFSDFEQEDVGASPEKKDVLGSPKDIPAPIPISEKQYQPLLRGCQGEGVTNEKQPTSNPEMGSTSQGERKRKRLATDGEEEALQYQLIDVLERNGKMLSAQLEAQNINFQLDREQRKDHASNLVAVLDKLADALGRIADKL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03642 357 Gene3D - 49 119 - -
Rops6g03642 357 MobiDBLite consensus disorder prediction 1 20 - -
Rops6g03642 357 MobiDBLite consensus disorder prediction 182 208 - -
Rops6g03642 357 CDD GT1 47 121 - -
Rops6g03642 357 MobiDBLite consensus disorder prediction 172 294 - -
Rops6g03642 357 MobiDBLite consensus disorder prediction 265 280 - -
Rops6g03642 357 MobiDBLite consensus disorder prediction 1 46 - -
Rops6g03642 357 Pfam Myb/SANT-like DNA-binding domain 48 137 IPR044822 -
Rops6g03642 357 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 20 357 - -
Rops6g03642 357 ProSiteProfiles Myb-like domain profile. 48 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03642 Rops-Chr6 61617183 61620752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03642 38 122 Trihelix Transcription Factor Family AT1G76890 27.059 8.49e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops6g03642 Myb_DNA-bind_4 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03642 - - pcin:129308058 536.569