Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03641 ATGGACCAAATAGATTGGATTGAAAAGATAACAGGTGTTATTGCATCATTGCTGAGTTCTCAGATTCCTGAAAGGTGTTTGCCTGCATGTCCAATGGGAAGTGGTCATCATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGCTGAAGAATATGCTGCAGAGAGAAGTCTTGCTTCTGTACATTTCGAGCACCCCTCAAGAAATTTGCAGCAGCAGCGATCCTGTACTAAAAGTGAGAAGCCGATCAATGCATTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATCGAGTGTTCTGGTGTTCACCGAAACCTTGTTGTACACATATCAAAGGTCATGTCTCTCACTTTGGACGTTAAAGTTTGGGAACCTTCTGTGATAAGTTTGTTTCAGTCTCTTGGGAATACTTCTGCTAACTCAGTCTGGGAGGAACGGCTGCAATCAAGAAATGCCTTTCAGGTTGATCTTGACCCCACAGGCTTAAACAAGTCCGACAAACCACAGTATGAAGAAAAGCTTTTTGTTCAGAAGCCAAAGGATAGTCAATACCATTTCTTGGTGGCACAACAGATCTGGGATGTGCATACTAATGACAAAAAAGCTGTATACCGCTACATTGTTAATTCTGACATTGACATCAATGCTGTTTATGAGCAAATGTGCTGCAATTCTTTAACCCTTTCCATAGTAATGTTACTAAAAGAGCAGGCAAGCCAGGATCACGGTTCTATATTAGCTGGGAGTTCATTGGACTGTTCCTCTCCTGGATCTTTGAATTTGGTAGGTAGAAAAGGCCAGATAATGGACAAGCTAGTCAGATATACCCTACTTCACCTTGCTTCTGAAACTGCTGATATTGGTATGCTAGAGCTCCTCCTGCAATATGGTGCAAATATTAATGCAACTGATTTGAGAGGTCAAACACCACTACATCGCTGTATCCTCAGAGGCAGATCTGCATTTGCAAGATTACTTCTTTCAAGGGGAGCTTATTCTAGAGCTGTTGATGAGCTGGATAGAACCCCTATTGAGCTTGCTGTACAATCAAATTTCCATGACAGGGAAGTCCTCACTCTGCTGTCTGATTCAAACGGATGA 1179 0.4232 MDQIDWIEKITGVIASLLSSQIPERCLPACPMGSGHHRSASESSSFESSDFDHSAAEEYAAERSLASVHFEHPSRNLQQQRSCTKSEKPINALRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLVVHISKVMSLTLDVKVWEPSVISLFQSLGNTSANSVWEERLQSRNAFQVDLDPTGLNKSDKPQYEEKLFVQKPKDSQYHFLVAQQIWDVHTNDKKAVYRYIVNSDIDINAVYEQMCCNSLTLSIVMLLKEQASQDHGSILAGSSLDCSSPGSLNLVGRKGQIMDKLVRYTLLHLASETADIGMLELLLQYGANINATDLRGQTPLHRCILRGRSAFARLLLSRGAYSRAVDELDRTPIELAVQSNFHDREVLTLLSDSNG* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03641 392 ProSiteProfiles Ankyrin repeat region circular profile. 332 357 - -
Rops6g03641 392 ProSiteProfiles ARF GTPase-activating proteins domain profile. 87 209 IPR001164 GO:0005096
Rops6g03641 392 ProSiteProfiles Ankyrin repeat region circular profile. 299 330 - -
Rops6g03641 392 SMART ANK_2a 332 362 IPR002110 GO:0005515
Rops6g03641 392 SMART ANK_2a 299 328 IPR002110 GO:0005515
Rops6g03641 392 SUPERFAMILY ArfGap/RecO-like zinc finger 87 202 IPR037278 -
Rops6g03641 392 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 69 243 - -
Rops6g03641 392 Pfam Putative GTPase activating protein for Arf 89 204 IPR001164 GO:0005096
Rops6g03641 392 Gene3D - 290 391 IPR036770 -
Rops6g03641 392 ProSiteProfiles Ankyrin repeat profile. 299 331 IPR002110 GO:0005515
Rops6g03641 392 PRINTS HIV Rev interacting protein signature 141 162 IPR001164 GO:0005096
Rops6g03641 392 PRINTS HIV Rev interacting protein signature 99 118 IPR001164 GO:0005096
Rops6g03641 392 PRINTS HIV Rev interacting protein signature 118 135 IPR001164 GO:0005096
Rops6g03641 392 ProSiteProfiles Ankyrin repeat profile. 332 364 IPR002110 GO:0005515
Rops6g03641 392 SMART arf_gap_3 87 209 IPR001164 GO:0005096
Rops6g03641 392 Pfam Ankyrin repeats (many copies) 301 353 IPR002110 GO:0005515
Rops6g03641 392 CDD ArfGap 90 173 - -
Rops6g03641 392 PANTHER CENTAURIN/ARF 1 390 IPR045258 GO:0005096
Rops6g03641 392 Gene3D Arf GTPase activating protein 76 214 IPR038508 -
Rops6g03641 392 SUPERFAMILY Ankyrin repeat 232 380 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03641 Rops-Chr6 61580578 61585586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03641 84 213 C2H2 Transcription Factor Family AT3G07940 39.850 1.05e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03641 K12489 - gmx:100798227 561.992