Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03619 ATGTATCCCTCTTCCTCTTCTGCTTCTTCTTCTTCTGCTTCTTCGTCACAGCAACATAGCTCCATCACCCAAACGGGGCTGACCAGGTATGGGTCCGCCCCAGGGTCTCTGCTGACGAGCACTGTTGAAGCGGTGATAGGGGGAGGATCGCGCCTCCTGTCAGGGCATTACTACTCGGGAGACTCTTCCGAGTCAACCTGCAAAGAGCAAACACCTTCTTACGAGGCATATGCTGGATCCGCCTTGCTCCGTCAGAAAAGCTCTCCACCCGGCTTCCTCTCCCATCTCGCCACCACTGCCTCCGCCCCACATAACAATCACAATCACAATCACAATGGGGGGGGCTTCACAATCACGAGGGGTGGTGGTAGCTCGCATGCGGGGTCAAGGTTCAAGGCTGAATTGAGCTTCACTGGGCAAGAATGTCTTTCTGGTATATCCGAGAATGTTGTTGATCCCACCTCTGACCATACCACATCTGCATCTGCCAGCACGGGCTTTGGATGGGACAATTCTAATTCCATTGTTTTCTCTGCTCCCCCAACTAAGCGTTCCAAGGCTGACGATGCTGACCTTCTACATTGCCTCACTGCCCTCGATTCTCAGTTTAGTCTGCCACAGACAACTCTGGAAATGGCAACGGTGGAGAAGCTATTGCATATTCCCGAAGATTCTGTCCCTTGTAAAATCCGTGCCAAGCGAGGCTGTGCCACTCATCCCCGTAGCATTGCTGAACGGGAGAGAAGAACGAGAATAAGTGGGAAATTGAAGAAATTACAGGACCTTGTACCTAATATGGATAAGCAAACAAGTTATGCTGACATGCTGGATTTGGCCGTTCAACATATTAAAGGTCTTCAAGGTCAAGTTCAGAAGTTTCACAAAGAACTTGAGAATTGCACCTGCGGATGCAAAGAAAACACATGA 927 0.5016 MYPSSSSASSSSASSSQQHSSITQTGLTRYGSAPGSLLTSTVEAVIGGGSRLLSGHYYSGDSSESTCKEQTPSYEAYAGSALLRQKSSPPGFLSHLATTASAPHNNHNHNHNGGGFTITRGGGSSHAGSRFKAELSFTGQECLSGISENVVDPTSDHTTSASASTGFGWDNSNSIVFSAPPTKRSKADDADLLHCLTALDSQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQGQVQKFHKELENCTCGCKENT* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03619 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 239 300 IPR036638 GO:0046983
Rops6g03619 308 Gene3D - 237 306 IPR036638 GO:0046983
Rops6g03619 308 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 295 - -
Rops6g03619 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 286 IPR011598 GO:0046983
Rops6g03619 308 FunFam Transcription factor bHLH130 family 237 305 - -
Rops6g03619 308 SMART finulus 242 292 IPR011598 GO:0046983
Rops6g03619 308 Pfam Helix-loop-helix DNA-binding domain 241 287 IPR011598 GO:0046983
Rops6g03619 308 MobiDBLite consensus disorder prediction 1 30 - -
Rops6g03619 308 CDD bHLH_AtbHLH_like 241 292 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03619 Rops-Chr6 61206049 61210506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03619 26 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 43.429 1.28e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g03619 HLH 4.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03619 - - vra:106771988 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03619 6 61206049 61210506 Rops6g03619 6 61206049 61210506 ECH
Rops8g02859 8 64341921 64344684 Rops6g03619 6 61206049 61210506 ECH
Rops6g00643 6 16811196 16814431 Rops6g03619 6 61206049 61210506 ECH