Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03612 ATGGATCGCAAGAGGGGAAGGCCTGAAGGTGCCTTCAATGGCAATGGCGGCGCCAAGAAATCCAAGCTAGAAATGGAGTCCTTTACAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGGTGTCCATTTGGTGAGGGATGCCATTTCCTGCATTACGTTCCTGGTGGTTTCAAAGCTGTCTCTCAGAGGATCAATGTTGGTAGCAGTCCTGCTCTTCCACAAATTGGTAGAAATCAAACTGTTCCACCATCCTTCCCAGACGGATCTTCTCCTCCAGTTGTTAAAACCCGAATATGCAACAAGTATAATACAGCCGAAGGTTGCAAATTTGGTGATAAATGTCACTTTGCCCATGGTGAGTGGGAACTTGGCAGGCCTACAGTCCCATCATATGAAGATCATCGCTCCTTGGGACAAATGCAAAGCAGCAGGGTTGGTGGGCGAGTTGAGCCCCCACCTCCAGCTCATGGAGCTGCTGCCAGCTTTGGAGCCTCGGCTACTGCAAAGATTAGTATCAATGCTTCCCTAGCTGGAGCTATCATTGGAAAAAATGGTGTCAACTCTAAGCAAATATGTCGTGTAACAGGAGCCAAACTTTCCATAAGGGATCATGACTCAGATCCTAACCTCAGAAACATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCTAGTGCCATGGTTCGTGAACTTATTCTTAACGTTAGTTCTGCTTCTGGGCCCCCGATGAAAAACGTCACTACACAGACCTCTGCCCCTGCAAGCAACTTCAAGACTAAGCTGTGTGAAAACTTTGCCAAAGGTTCCTGTACTTTTGGGGAAAGGTGCCACTTCGCGCATGGAACAGAGGAATTACGCAAGCCTGGAATGTACAGAAAGAATGGAGGATCCAACCCAAGTCTTGAGAAAATATGA 939 0.4696 MDRKRGRPEGAFNGNGGAKKSKLEMESFTTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQRINVGSSPALPQIGRNQTVPPSFPDGSSPPVVKTRICNKYNTAEGCKFGDKCHFAHGEWELGRPTVPSYEDHRSLGQMQSSRVGGRVEPPPPAHGAAASFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIRDHDSDPNLRNIELEGSFDQIKQASAMVRELILNVSSASGPPMKNVTTQTSAPASNFKTKLCENFAKGSCTFGERCHFAHGTEELRKPGMYRKNGGSNPSLEKI* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03612 312 Gene3D K Homology domain, type 1 168 260 IPR036612 GO:0003723
Rops6g03612 312 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Rops6g03612 312 Gene3D - 95 132 - -
Rops6g03612 312 Gene3D - 261 295 - -
Rops6g03612 312 ProSiteProfiles Type-1 KH domain profile. 172 236 - -
Rops6g03612 312 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 289 IPR000571 GO:0046872
Rops6g03612 312 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Rops6g03612 312 SUPERFAMILY CCCH zinc finger 98 131 IPR036855 GO:0046872
Rops6g03612 312 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Rops6g03612 312 MobiDBLite consensus disorder prediction 77 91 - -
Rops6g03612 312 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Rops6g03612 312 SMART kh_6 171 241 IPR004087 GO:0003676
Rops6g03612 312 SUPERFAMILY CCCH zinc finger 263 295 IPR036855 GO:0046872
Rops6g03612 312 CDD KH-I_AtC3H36_like 176 240 - -
Rops6g03612 312 ProSiteProfiles Zinc finger C3H1-type profile. 101 128 IPR000571 GO:0046872
Rops6g03612 312 PANTHER CCCH ZINC FINGER/TIS11-RELATED 9 136 IPR045877 GO:0003729
Rops6g03612 312 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Rops6g03612 312 SMART c3hfinal6 102 127 IPR000571 GO:0046872
Rops6g03612 312 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Rops6g03612 312 FunFam Zinc finger CCCH domain-containing protein 259 295 - -
Rops6g03612 312 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 243 IPR036612 GO:0003723
Rops6g03612 312 MobiDBLite consensus disorder prediction 139 167 - -
Rops6g03612 312 FunFam Zinc finger CCCH domain-containing protein 95 132 - -
Rops6g03612 312 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Rops6g03612 312 MobiDBLite consensus disorder prediction 1 23 - -
Rops6g03612 312 Pfam KH domain 175 238 IPR004088 GO:0003723
Rops6g03612 312 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03612 Rops-Chr6 61088451 61099370 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops6g03612 KH_1 1.4e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03612 - - gmx:100818781 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03612 6 61088451 61099370 Rops6g03612 6 61088451 61099370 ECH