Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03610 ATGGGAACTAACGAAACTTCAGATTCTAGTGAAATCAATTCTGCATTTGGGGCAGCAAAACGTGCGAGGTATGAAGGGTATGAGAAGTTCAAAGGTGTTGTGCCTCAAGAAAATGGGCATTGGGGTGCACAAATATATGCAAACCACCAAAGAATCTGGTTAGGGACTTTCAAATCTGAAAGAGAGGCTGCCATGGCTTATGACAGCGCCACCATCAAGCTTAGAAGCGGGGAAAGCCACAGAAATTTTCCATGGAATGATGAAACGGTTCATGAGCCTCACTTTCAAAGCCATTACAGCATAGAAACAGTGCTGACCATGATTAGAAATGGCACCTATCCATCCAAATTTACAACCTTTCTTAGGACTCAAACCCAAAGCCTAGGCCAAGAAAGGGTTGGAATTAGTGCCAAACATGTAGTAAGGGTGAAGGGTGAGGAACAATTCTCTTGTACCCAACTTTTTCAAAAAGAATTAACACCAAGTGATGTGGGCAAGCTCAACAGGCTCGTCATCCCTAAAAAACATGCAGTTACCTATTTTCCTTGCGTTTGTGGCAGTGATGAAATGGATGTTGGGTGTGCTGACACTGAGGTTGTCTTTTATGACAAGCTCATGAGATTATGGAAATTTCGATATTGCTATTGGAAGAGTAGCCAAAGTTATGTGTTCACCAGAGGGTGGAATCGGTTTGTGAAGGATAAGAAATTAAAGGCTAAAGACATCATTGCATTTTATATGTGTGAACCTATAAATTGGAGTAAAGGGGGAAGGAAAGAAGTTTTTTCATTGATTGATGTGATATATAATGAAGATGAGAGAAGGCAATGTTTTGGAGAGAAGAAGGGGGATACAAAACAAATTTTGGGAAACAGGTTAATTTGCACTAAAGTAGAAGATGAAGGCCAAGAGAGCAAGGATAGCAAGGATTTGAATGCACTACATTCGGCACATAATGCACAAAGAGGTTTGAGACTTTTTGGTGTAAGTATCAACTGA 999 0.4054 MGTNETSDSSEINSAFGAAKRARYEGYEKFKGVVPQENGHWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSGESHRNFPWNDETVHEPHFQSHYSIETVLTMIRNGTYPSKFTTFLRTQTQSLGQERVGISAKHVVRVKGEEQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPCVCGSDEMDVGCADTEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDIIAFYMCEPINWSKGGRKEVFSLIDVIYNEDERRQCFGEKKGDTKQILGNRLICTKVEDEGQESKDSKDLNALHSAHNAQRGLRLFGVSIN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03610 332 SUPERFAMILY DNA-binding pseudobarrel domain 153 250 IPR015300 -
Rops6g03610 332 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Rops6g03610 332 SMART B3_2 155 260 IPR003340 GO:0003677
Rops6g03610 332 Gene3D AP2/ERF domain 28 85 IPR036955 GO:0003700|GO:0006355
Rops6g03610 332 ProSiteProfiles AP2/ERF domain profile. 29 84 IPR001471 GO:0003700|GO:0006355
Rops6g03610 332 FunFam AP2 domain-containing protein RAP2.8 28 85 - -
Rops6g03610 332 SMART rav1_2 29 90 IPR001471 GO:0003700|GO:0006355
Rops6g03610 332 CDD B3_DNA 154 247 IPR003340 GO:0003677
Rops6g03610 332 Pfam AP2 domain 29 75 IPR001471 GO:0003700|GO:0006355
Rops6g03610 332 ProSiteProfiles B3 DNA-binding domain profile. 155 268 IPR003340 GO:0003677
Rops6g03610 332 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 331 IPR044800 GO:0003700
Rops6g03610 332 Pfam B3 DNA binding domain 155 247 IPR003340 GO:0003677
Rops6g03610 332 Gene3D - 150 262 IPR015300 -
Rops6g03610 332 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03610 Rops-Chr6 61073708 61074706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03610 26 331 RAV Transcription Factor Family AT1G50680 51.235 6.73e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops6g03610 B3 1.1e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03610 K09287 - gmx:102660503 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03610 6 61073708 61074706 Rops6g03610 6 61073708 61074706 ECH