Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03601 ATGAGTCTTACTATCCTTACTCTTATCCTTCTCCCCTTGCTGCCATGCGTCTCTGCTTATAGCCCTGATGATATACTTAGTGTTGGTCAGACACTTGTTGCAGGTGATGACGGGGGTGCTCCATGGCTTTCTCCATCAGAAGAGTTTGCCTTGGGATTTCATCAACTTGAGAATGATCTTTTCTTGCTAGCCATATGGTACCACAAAATACCCGACAAGACTGTCATATGGTCTGCAAACGGAGACAACCCTGCTCCCAATGGATCAAAACTAGAGCTAAATGAATACAGTGGACTAGTGCTGAGTAGCCCTCAAGACTCTGAGCTATGGAGATCACAACCCATATCAGGTTCTGTTTCTCATGGGTTAATGAAAGATACAGGCAACTTCCAGCTGCTGGGTAAGAATTCTCAGGTGTTGTGGGAAAGTTTCAGGTTGCCAACTGATACGTTGGTGCCATCTCAAATTATGGAGGTCAGCGGCACACTCTCATCTCGACAGAAAGAGACCAACTTCTCAAAAGGAAGGTTTCGATTTCGCTTGCTTGAGGCTGGTAATGCTGTGCTCAATCCTATAAATTTGCCCACCAACTATACTTACGACGCTTATTACGACAGTGGCACCAGTGATGATTCCAATCAAACAAACAAAGGTTACCGTGTGGTTTTTGATGAATCAGGCTTCTTGTACATAATGAGAAGGAGCGGTGAGAGGTTTAATATTACGAGTCCAAAGGATGTGCTCCCAACCGATTCCTATTATTACAAAGCAACCATCAATTTTGATGGAGTTTTCACCATATCACATCACCCGAAAGATCCAAGTGCAAATCAAAGCTGGACAGCGGTGAAGACATTACCAGATAACATCTGCATGGATTTAACAGGAGTAAAAGGTAGTGGGGTATGTGGATTCAACAGTATCTGCTCTCTCAAAACTGACAAAAGGCCAATCTGCGGATGCCCAGAAGGGTATTCTCCTCTTGATTCAACTGATGAGTATGGCAGCTGCAAACCAAATTTTGAACTCACTTGTGAAGGAAGTGGACAGAGCTCGCAAGAAGATCTATACTTCATGAAGGAAATGCCAAATACTGACTGGCCTACATCAGATTATGAACAGTATATACCTTATACTTTAGAAGACTGCAAGGCTTCTTGCTTGCAAGATTGCTTATGTGCTGTTTCTATTTTTAGAGATGATAGCTGCTGGAAGAAGAAGCTGCCTCTCTCAAATGGAAGAAAGGATAAAGTTGCGGTATTTGCTTTGATTAAATTGAAGAAAAATAATGATTCAGTGGTACGTCCTCAACCTCCAATCGTAGAAGAGAAGAAATATAAAAAAGATCAAGATACTTTGATAACTGTGATATCAGTCCTTCTAGGTGGCTCTGTTATGCTGGTCTGTGCATTAGGTATTGGTTTCTTCTTCTACTACAACAAAAAGAATTCTACCAAAAAAACTGTTGCAGAGAGCAACTTGCGCAGTTTCACCTATGGAGAGCTTGTGCAAGCAACAAACAACTTCAAAGAAGAATTGGGAAGGGGATCATGTGGGATAGTCTTTAAAGGAATTGCAGATTCCACAACTATTGCAGTCAAGAAATTAGACAAGGTGTTCAAAGACAGCGACAAGGAATTCAAAACAGAAGTGAATGTGATAGGTCAAACTCATCATAAGAACTTGGTTCGGCTGCTTGGATATTGTGATGAGGGAGAACACCGGATTCTGGTATATGAATTCTTGAGCAATGGAGCTTTGGCAAGCTTCCTTTTTGGAGATTTCAAACCAAGTTGGAATCAAAGAGCGCATATTGCCTTTGGGATTGCAAGAGGGCTCGTTTACTTGCACGAGGAATGCTGCACCCAGATCATCCATTGTGACATAAAGCCACAGAATATACTTCTAGATGAGTATTGCAATGCAAGGATATCAGATTTTGGGTTGGCAAAGCTACTTATGATCAATCAAAGCCACACAGAAACTGGCATTCGAGGAACAAAAGGGTATGTTGCGCCAGAGTGGTTCAGGAGTGCACCAATCACTGTCAAGGTTGATGTTTACAGTTTTGGTGTGCTGCTTCTGGAGATCATTTGTTGTAGAAAAAATGTAGATACCAATGTTGGCAATGAAGAGATGGTCATTTTAACTGATTGGGCTTATGACTGCTATCGAGCTGGAAGAATTGACAACCTGGTTGTTGATGATGAAGAGCCTATCAACGACATGAAGAGGCTGGAAAGGTTTGTAATGGTAGCTATTTGGTGCCTTCAAGAAGATCCCTCTCTCAGGCCAACAATGAAGAAGGTTATGTTAATGCTGGAAGGAATAGCTCCAGTTACCATTCCACCGAGTCCCTGCCCTTATACTTCTGTTTCTGTTAGTGGCAGTTGA 2394 0.4211 MSLTILTLILLPLLPCVSAYSPDDILSVGQTLVAGDDGGAPWLSPSEEFALGFHQLENDLFLLAIWYHKIPDKTVIWSANGDNPAPNGSKLELNEYSGLVLSSPQDSELWRSQPISGSVSHGLMKDTGNFQLLGKNSQVLWESFRLPTDTLVPSQIMEVSGTLSSRQKETNFSKGRFRFRLLEAGNAVLNPINLPTNYTYDAYYDSGTSDDSNQTNKGYRVVFDESGFLYIMRRSGERFNITSPKDVLPTDSYYYKATINFDGVFTISHHPKDPSANQSWTAVKTLPDNICMDLTGVKGSGVCGFNSICSLKTDKRPICGCPEGYSPLDSTDEYGSCKPNFELTCEGSGQSSQEDLYFMKEMPNTDWPTSDYEQYIPYTLEDCKASCLQDCLCAVSIFRDDSCWKKKLPLSNGRKDKVAVFALIKLKKNNDSVVRPQPPIVEEKKYKKDQDTLITVISVLLGGSVMLVCALGIGFFFYYNKKNSTKKTVAESNLRSFTYGELVQATNNFKEELGRGSCGIVFKGIADSTTIAVKKLDKVFKDSDKEFKTEVNVIGQTHHKNLVRLLGYCDEGEHRILVYEFLSNGALASFLFGDFKPSWNQRAHIAFGIARGLVYLHEECCTQIIHCDIKPQNILLDEYCNARISDFGLAKLLMINQSHTETGIRGTKGYVAPEWFRSAPITVKVDVYSFGVLLLEIICCRKNVDTNVGNEEMVILTDWAYDCYRAGRIDNLVVDDEEPINDMKRLERFVMVAIWCLQEDPSLRPTMKKVMLMLEGIAPVTIPPSPCPYTSVSVSGS* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03601 797 CDD B_lectin 23 144 IPR001480 -
Rops6g03601 797 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 781 - -
Rops6g03601 797 SUPERFAMILY Protein kinase-like (PK-like) 485 775 IPR011009 -
Rops6g03601 797 SMART serkin_6 507 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03601 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 207 IPR036426 -
Rops6g03601 797 Pfam Protein kinase domain 509 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03601 797 Gene3D - 19 144 IPR036426 -
Rops6g03601 797 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 37 788 - -
Rops6g03601 797 Gene3D - 148 284 IPR036426 -
Rops6g03601 797 ProSiteProfiles Protein kinase domain profile. 507 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03601 797 Pfam D-mannose binding lectin 74 160 IPR001480 -
Rops6g03601 797 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 22 145 - -
Rops6g03601 797 FunFam Serine/threonine-protein kinase 148 294 - -
Rops6g03601 797 SMART blect_4 23 147 IPR001480 -
Rops6g03601 797 Gene3D Transferase(Phosphotransferase) domain 1 582 782 - -
Rops6g03601 797 Gene3D Phosphorylase Kinase; domain 1 474 581 - -
Rops6g03601 797 FunFam S-receptor-like serine/threonine-protein kinase 478 581 - -
Rops6g03601 797 ProSiteProfiles Bulb-type lectin domain profile. 17 145 IPR001480 -
Rops6g03601 797 PIRSF SRK 1 796 IPR024171 GO:0004674
Rops6g03601 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03601 Rops-Chr6 60998864 61001339 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03601 475 776 Receptor kinase-like Gene Family AT1G60800 42.903 2.24e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops6g03601 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03601 - - gmx:100811299 1229.54