Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03566 ATGCCGAAGCTTCATAGTAGAGTACGACGTGGTCATGCTGGTAACACTCCAGAGAGGGTTCAAGTAGGAGGATCACCGGTGTATAAGGTAGAGAGAAAACTGGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGTCGTCGTGAGAGTGCTACTGGCCATGGAGCTATGGAGGTTGCTCTGAAATTTGAGCATAGAAACAGTAAAGGCTGTAACTATGGCCCTCCTTATGAGTGGCAAGTATACGACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTAATGGTGATGGACATGCTTGGTCCAAGTTTGTGGGATGTCTGGAATTCCTCGTGCCAGACGATGTCTGCCAAAATGGTCTCATGTATAGCTGTTGAGTCCTTATCGATACTTGAGAAGATGCACTCAAGAGGTTATGTACATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCAGCTACAGCACAAGAGAAGAAACTGTTTCTTGTTGACCTTGGATTAGCAACAAAGTGGAGAGACTCCTCCACTGGACAGCATGTTGTATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCTAGTGTCCATGCTCATTTGGGAAGAGCTGCAAGTAGAAGGGATGATCTGGAGTCTCTTGCATACACATTGATCTTCCTTCATAAAGGCCGATTACCATGGCAAGGTTATCAGGGTGATAGCAAATCTTTCCTTGTCTGCAAAAAGAAAATGGGGACATCTCCTGAGATGCTATGCTGCTTTTGCCCTGCTCCTTTTAGGCAATTTCTTGAGATTGTAGTGAACATGAGATTTGATGAAGAACCTAACTATTCCAAGCTAATATCCTTGTTTGATGGTATGATCGGACCCAATCCAGCATTACGACCGATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAGCGGGGTAAAATGAATGTTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCATTTAGGGGATCGTGATGAGCAATGGAATTCAATTTGCAATGCGATGCTACGAATGAAACAAAGCTCTACATTTGCTGACCGGAGGCAACAGTTCGAGGACATACGGCCCCACCTGTTGGATTGGTTGTACGTCACTCTAGATCGGTTGGCCGTCATGGAAGATGATTTGGCTGTCACTCGAGATCAGTTGGGCGTCATGGGAGATGATTTGGCAAAAACAGAGGAAAGGTTGGAGAAGATGAAACAGATAATGCCGGAGCTTCGTAGTGGAGTTCGACGTGGTCGTGCTGCGGCGGTAGGCCAGAAAGGTTCAGAACCGGCGAAGAGAAACGTGAAGAAGACTCGTGCTGTGGTTGCGGCGGCGAAGGGAAGGCCAAGAACTAGATTGGCGGCGAAGAAATTGGAGCAAGAGAAACCGTTGATCATAATATCAGGGCAAGATTGTAATATAGAACGTGCAAAGGCGAAGAAGAACGAGAAAGAGGGCGGAGTAGGTGTGATGGGTGATGAAAGTGGTGGGTTGAGTGCTAATAAAGGTGTTGTCCCAGAAGATGATGGGAGCACTCCACCTTTTCCAGAGAGGGTTCAAGTAGGAGGATCACCTATGTACAAGGTAGAGAGAAAACTGGGTAAAGGTGGGTTTGGTCAGGTTTTTGTTGGCCGACGCGAGCGTGCCAATGGCCCAGGAGCTGTGGAGGTTGCTCTGAAATTTGAACATAGAAACAGTAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATGGTGATGGACATGCTTGGTCCAAGTTTGTGGGATGTCTGGAATTCCTCAAGCCAGACGATGTCTGCTGAAATGGTCTCGTGTATTGCTGTTGAGTCCTTATCGATACTTGAGAAGATGCACTCAAGAGGTTATGTACATGGAGATGTAAAACCAGAGAACTTTTTACTGGGTCAGCCAGCTACAGCGCAAGAAAAGAAACTGTTTCTTGTTGACCTTGGATTAGCAACAAAATGGAGAGACTCCTCCTCTGGACAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCTAGTGTTCATGCTCATCTGGGAAGAACTGCAAGTAGAAGGGATGATCTTGAATCTCTGGCATACACATTGATCTTCCTTCATAAAGGCCGATTACCATGGCAAGGTTATCAGGGTGATACCAAATCCTTCCTGGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATGCTGTGCTGCTTTTGCCCTGCTCCTTTTAGGCAATTTCTTGAAATTGTAGTGGGCATGAGATTTGATGAAGAACCTAACTATTCCAAGCTAATATCCTTGTTTGATGGTATGATCGGGCCGAATCCAGCATTGCGGCCAATTAATACTGAAGGCGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGATTAGGGGTTCCTGCTACGCAATGGATTTCGGTTTACAATGCGAGACTACCAATGAAACAAAGGTATCATTACAATGTGGCTGATGCAAGATTATCACAACATGTTGAGAGAGGGATTGCAGATGGCCTTCTTATCAGCTGTGTGTCTTCTTGTTCCAATCTATGGGCACTTATTATGGATGCTGGGACTGGTTTTACAAATCAAGTTTACAAGTTGTCCCCTTTTTTCTTACACAAGGAATGGATCATGGAACAGTGGGATAAGAACTATTACATTACTTCTATTGCAGGGGCCAATAATGGCAGCTCTCTTGTGGTGATGTCAAAAGGTACACAGTATACTCAACAATCATACAAAGTAAGTGAATCTTTCCCATTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCAGGTCACCTCTATGGCTACTGCGGGAAGTCGCTGGGGTGTTGTTATGTCTCGCAATGCCGGATTCAGTGATCAGGTGGTTGAACTTGATTTTCTCTATCCAAGTGAGGGCATCCATAGACGTTGGGATAGTGGTTATAGGATTACAGCAACTGCAGCTACATGGGATCAATCTGCTCTTATATTGAGTATTCCAAGGCGCAGGCCTGGTGATGAAACTCAGGAAACTCTGCGCACATCTCAATTTCCCAGCACTCATGTTAAGGAAAAATGGTCTAAAAACCTTTATCTTGCCTGTTTGTGCTATGGGCGCACGTAA 3300 0.4461 MPKLHSRVRRGHAGNTPERVQVGGSPVYKVERKLGKGGFGQVFVGRRESATGHGAMEVALKFEHRNSKGCNYGPPYEWQVYDTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSCQTMSAKMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPATAQEKKLFLVDLGLATKWRDSSTGQHVVYDQRPDMFRGTVRYASVHAHLGRAASRRDDLESLAYTLIFLHKGRLPWQGYQGDSKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEIVVNMRFDEEPNYSKLISLFDGMIGPNPALRPINTEGAQKVGQKRGKMNVEEEDDSQPKKKVHLGDRDEQWNSICNAMLRMKQSSTFADRRQQFEDIRPHLLDWLYVTLDRLAVMEDDLAVTRDQLGVMGDDLAKTEERLEKMKQIMPELRSGVRRGRAAAVGQKGSEPAKRNVKKTRAVVAAAKGRPRTRLAAKKLEQEKPLIIISGQDCNIERAKAKKNEKEGGVGVMGDESGGLSANKGVVPEDDGSTPPFPERVQVGGSPMYKVERKLGKGGFGQVFVGRRERANGPGAVEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQTMSAEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPATAQEKKLFLVDLGLATKWRDSSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDTKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEIVVGMRFDEEPNYSKLISLFDGMIGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLSQHVERGIADGLLISCVSSCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWDKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSESFPFKWINKKWREGFQVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDSGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRT* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03566 1099 SMART serkin_6 28 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03566 1099 SMART serkin_6 544 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03566 1099 MobiDBLite consensus disorder prediction 432 456 - -
Rops6g03566 1099 SUPERFAMILY Protein kinase-like (PK-like) 544 822 IPR011009 -
Rops6g03566 1099 Pfam Protein kinase domain 28 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03566 1099 Pfam Protein kinase domain 544 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03566 1099 MobiDBLite consensus disorder prediction 309 343 - -
Rops6g03566 1099 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Rops6g03566 1099 FunFam casein kinase 1-like protein HD16 3 341 - -
Rops6g03566 1099 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672|GO:0006468
Rops6g03566 1099 MobiDBLite consensus disorder prediction 323 343 - -
Rops6g03566 1099 ProSiteProfiles Protein kinase domain profile. 544 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03566 1099 SUPERFAMILY Protein kinase-like (PK-like) 28 306 IPR011009 -
Rops6g03566 1099 MobiDBLite consensus disorder prediction 1 23 - -
Rops6g03566 1099 CDD STKc_CK1 28 298 - -
Rops6g03566 1099 ProSiteProfiles Protein kinase domain profile. 28 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03566 1099 ProSitePatterns Protein kinases ATP-binding region signature. 34 61 IPR017441 GO:0005524
Rops6g03566 1099 MobiDBLite consensus disorder prediction 501 538 - -
Rops6g03566 1099 ProSitePatterns Protein kinases ATP-binding region signature. 550 577 IPR017441 GO:0005524
Rops6g03566 1099 PANTHER CASEIN KINASE-RELATED 538 1063 - -
Rops6g03566 1099 CDD STKc_CK1 543 814 - -
Rops6g03566 1099 FunFam casein kinase 1-like protein HD16 517 857 - -
Rops6g03566 1099 Gene3D Transferase(Phosphotransferase) domain 1 13 362 - -
Rops6g03566 1099 Gene3D Transferase(Phosphotransferase) domain 1 532 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03566 Rops-Chr6 60582867 60594554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03566 657 814 MAP Kinase Kinase Kinase AT5G50180 26.875 3.97e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Rops6g03566 Pkinase 6.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03566 - - gmx:100819969 1198.34