Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03564 ATGGCATCGACATCTTGTGTTAGTAAGAGCCCATTACCCATGAAAGAGGCAGCTTCGAGCTGTCGTGCATATCCTCCTCCTCTAGCAAAATATGAGGATGTTGTGGAGAATCCCAAGCTCTTCATGTTAACCTTGGAGAAGCTGCACGCTACTATGGGTACCAAGTTTATGATTCCCATTATTGGGGGACGAGAACTAGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGGGGAGGGATTGCGAAGATAATTAGAGAGAGAAGATGGAAAGATGTAACTTCAGTTTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTATTATGCTTCATTGCTATACCATTATGAGCAAATCTACTATTTTAAAGCCCATGAATGGAACCCTTCCACTTCTGATGCTTTGCAGAGTCAATCAACCATGCAAGTTCCTACTCCAAAGATGCAGTTTTTGCAGCCTTCATCAGAAATTCAACCAGCTGTCTTTCAACAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAGTGGCGGCATCTTCGGCAGGGTCTCCAGTCATTGGGGTCATTGATGGGAAATTTGACAGTGGGTATCTAGTTACTGTCACAGTGGGTTCAGAGAAACTCAAAGGTGTACTTTATCAAGCTCCACAAAACCCTGTATTGCTGGCATCCCATCATAGTGCTTTGGCCAACAACAACAATGCATCTGCTCCATTGGGTGTCCAGCGTCGCAGACGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGCGGATACAATTTCTTCTTTGCCGAACAGCATGCAAGACTAAAGCCACTTCACCAAGGGAAGGACAGGGAGATAAGTAGAATGATTGGTGAACTCTGGAACAAGTTAAAAGAATCTGAAAAGGCGGTTTATCAAGAGAAGGCTGTGAAGGATAAAGAGAGATACAGAGCAGAAATGGAGGATTATCGCGAGAAACTGAAGATGGGCCAAGTTATCAGTGACGCGGTGCCCCTTCAACAGAGACTTCCTGAACCAGATACTGACATGTTTGATGCTGACATGAAAATGGATGAAGCTGAGGCAGAATCTCCTCAAACTCCGGAGGAGAGCAGTTCTGGTGGAAGTGAGTATGAAGATGATAAAGGCATGGAGAAAGAATTTAATATGGATGCATTGCCTGTGGTAGGAGTGGGTGGTGAATCTAGCGGTTTGGCTTCAGAAGAGAAGTCATCATCCAAGGGGGGTTTAGGTTTATGA 1284 0.44 MASTSCVSKSPLPMKEAASSCRAYPPPLAKYEDVVENPKLFMLTLEKLHATMGTKFMIPIIGGRELDLHRLFVEVTSRGGIAKIIRERRWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAHEWNPSTSDALQSQSTMQVPTPKMQFLQPSSEIQPAVFQQSNVNAAKLPEAVAASSAGSPVIGVIDGKFDSGYLVTVTVGSEKLKGVLYQAPQNPVLLASHHSALANNNNASAPLGVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQGKDREISRMIGELWNKLKESEKAVYQEKAVKDKERYRAEMEDYREKLKMGQVISDAVPLQQRLPEPDTDMFDADMKMDEAEAESPQTPEESSSGGSEYEDDKGMEKEFNMDALPVVGVGGESSGLASEEKSSSKGGLGL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03564 427 CDD HMG-box_AtHMGB9-like 265 331 - -
Rops6g03564 427 SUPERFAMILY ARID-like 33 132 IPR036431 GO:0003677
Rops6g03564 427 Coils Coil 314 334 - -
Rops6g03564 427 SMART bright_3 36 127 IPR001606 GO:0003677
Rops6g03564 427 FunFam High mobility group B protein 15 247 342 - -
Rops6g03564 427 MobiDBLite consensus disorder prediction 355 371 - -
Rops6g03564 427 PRINTS High mobility group (HMG1/HMG2) protein signature 316 336 - -
Rops6g03564 427 PRINTS High mobility group (HMG1/HMG2) protein signature 297 316 - -
Rops6g03564 427 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 381 - -
Rops6g03564 427 Gene3D High mobility group box domain 249 343 IPR036910 -
Rops6g03564 427 FunFam High mobility group B protein 15 29 143 - -
Rops6g03564 427 Gene3D - 27 145 IPR036431 GO:0003677
Rops6g03564 427 SMART hmgende2 264 333 IPR009071 -
Rops6g03564 427 SMART ARID_2 32 122 - -
Rops6g03564 427 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Rops6g03564 427 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Rops6g03564 427 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Rops6g03564 427 MobiDBLite consensus disorder prediction 237 272 - -
Rops6g03564 427 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Rops6g03564 427 SUPERFAMILY HMG-box 253 336 IPR036910 -
Rops6g03564 427 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Rops6g03564 427 MobiDBLite consensus disorder prediction 345 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03564 Rops-Chr6 60565642 60571157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03564 1 365 ARID Transcription Factor Family AT1G04880 61.579 8.10e-144 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops6g03564 ARID 6.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03564 - - gmx:100783284 634.795