Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03550 ATGTCATTTCGAGGTCGCACTGCAATCCTCTGGTGGTCTCTGCAAACCGTTTTCAACACCCATCTGTCTCATTGTCTTCGCCCTTCTCCCATTCACTTCAAGTTCTATTCTTTGGCCCAACCCCAGGTTTCTGGACACTTGGTCGACCATTGCGATGAATTTTTGCCTTGGTTGGAGTGGAAAGCAGGTTCTAGGATTTCGTCATCGCTTTCAATTGGGAAATCTTCATATGGAAGGTCCCTGTTTGCTTCTAAGATAATACGAACTGGAGATTGCATTTTACAAGTTCCTTACAGTGTGCAAATAACTGCAGATAATCTCCCTTCTGAAATCAAATCTTTGATAAATGAGAAAGTTGGAAATATTGCAAAACTTGCTATTGTTATTCTAATTGAGAAGAAACTGGGTCAGGGCTCTGAGTGGGAACCTTATATCAGCTGTCTTCCGCAGCAAGGGGAGCTGCATAATACGATATTTTGGAATGAAAGTGAGTTGGAGATGATTCGTCAGAGTTCAGTTTATCAGGAAACAATTAACCAAAAGTCTCAAATTGAAAAGGACTTTTTGGCAATCAGGCTTGTTTTTGAATCTTTCCCTCAAAGTTTTGGAGATTTTACTTTCAAGGACTTCATGCATGCATGCACACAAGTTGGTTCTCGAGCATGGGGAAGCACAAAGGGTTTATCTCTGATTCCATTTGCAGATTTCTTAAACCATGATGGGGTTTCAGAAGCAATTGTAATGAGTGCTGATGACAAACAATGCTCCGAAGTTACCGCTGATCGTGACTATGCTCCTGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTGATGCTGGACTTTGGTTTTACAATTCCACACAACATTTATGATCAGGTTCAGATCCAGTTTGATGTACCTGAGCATGATCCTCTGCATGACATGAAATTGGGACTCTTGCAGCGGTACTTTGTGCCTCCAACCGAAGATATGAAGGGCTTGAAGTATTCTGTGAATTCCTTCACAATCAAGGAGGTGAGGTCTGCGAGAGGAAAAGGGAAGGGTCTTCCACAATCACTTCGTGCAGTTGCTCGTGTCCTTTCTTGTACCACACCTCAGGAACTTACCGATTTGGTCGTGGAAGCTGCACAAACTGATGGTAGGCTGGCTAGGCGCCCTTTACAAGATATCAACAAAGAGATGAAAGCACACCTGATGTTGTCATCATTATTCACCCAATTAATTGAGGAGCGCAATGCAACTGCCATGTCCTTGGATTCTTTCAATTCTCCCTCATTGTGTGAGAGACTTCCCGTTAGAAGACAAATGGCTCAAGATCTCCTACATGGTGAGCTTCGCATTCTCAAATCCGCTTCTGCCTGGTTGGAGAACTACTGTTTTTCCTTGACTAGATAA 1410 0.4255 MSFRGRTAILWWSLQTVFNTHLSHCLRPSPIHFKFYSLAQPQVSGHLVDHCDEFLPWLEWKAGSRISSSLSIGKSSYGRSLFASKIIRTGDCILQVPYSVQITADNLPSEIKSLINEKVGNIAKLAIVILIEKKLGQGSEWEPYISCLPQQGELHNTIFWNESELEMIRQSSVYQETINQKSQIEKDFLAIRLVFESFPQSFGDFTFKDFMHACTQVGSRAWGSTKGLSLIPFADFLNHDGVSEAIVMSADDKQCSEVTADRDYAPGEQVLIRYGKFSNATLMLDFGFTIPHNIYDQVQIQFDVPEHDPLHDMKLGLLQRYFVPPTEDMKGLKYSVNSFTIKEVRSARGKGKGLPQSLRAVARVLSCTTPQELTDLVVEAAQTDGRLARRPLQDINKEMKAHLMLSSLFTQLIEERNATAMSLDSFNSPSLCERLPVRRQMAQDLLHGELRILKSASAWLENYCFSLTR* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03550 469 Gene3D - 290 463 IPR036464 -
Rops6g03550 469 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 49 411 - -
Rops6g03550 469 SUPERFAMILY SET domain 49 293 IPR046341 -
Rops6g03550 469 CDD SET_RBCMT 77 289 IPR044431 GO:0016279|GO:0018022
Rops6g03550 469 FunFam Predicted protein 291 466 - -
Rops6g03550 469 Pfam SET domain 78 275 IPR001214 GO:0005515
Rops6g03550 469 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 47 288 - -
Rops6g03550 469 Pfam Rubisco LSMT substrate-binding 306 453 IPR015353 -
Rops6g03550 469 Gene3D set domain protein methyltransferase, domain 1 47 288 - -
Rops6g03550 469 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 300 463 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops6g03550 SET 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03550 K19199 - gmx:100818002 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03550 6 60391937 60399099 Rops6g03550 6 60391937 60399099 ECH