Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03544 ATGTCATCTCGCATCGTAGCGGAGAATGTCACTGATACGACGTCGTATTTGGACCTAATAGAACTCAACGACCTCACGCGCCGCCCAGCCGCCGGCGAGTCTCCGACTCTGGCGCAGCTTCTTAAGCACGTCGGAGACGTTCGTAAGGAAGCCACCGGCGACGGCAGCGAGACGCCGGTGCACCACGCTCTCGATGTAGCCGGAATTGAGCCCCGCTCGCTTCCATTCGTCCTCTCTTTCAGCAACCTCACCTACAGTATCAAGGTCAGCCCGAAATTGAGCTTCTCCTCGATCCTTCCCGGGCGCCGTAGCCGTCTCGGAGCGGCGGCGGAGTCACCGGAAGTCGGTGAGAGCGTGTTCACTCGAACAAAGACTCTCCTTAACGACATCTCCGGTGAAGCACGCGACGGAGAAATCATGGCGGTCCTCGGCGCCAGTGGTTCGGGAAAATCAACTCTGATCGACGCGCTGGCGAATCGAATCGCGAAGGGAAGTTTGAAAGGAACGGTGGCACTGAACGGCGAAGCACTAGAATCACGTCTTCTGAAGATGATTTCAGCTTACGTAATGCAAGACGATCTCCTCTTTCCAATGCTCACTGTTGAAGAAACCCTAACCTTCGCCGCCGAATTCCGATTACCACGCTCGCTCTCCAAATCCAAGAAGAAAGCACGTGTCCAAGCCCTAATCGATCAACTAGGTCTCCGAAACGCAGCCAAAACCGTTATCGGAGATGAAGGCCACCGTGGAGTCTCCGGCGGAGAACGCCGCCGTGTATCCATTGGGATGGACATAATCCACGACCCGATCCTTTTGTTCCTCGACGAACCAACCTCAGGACTAGACTCAACGAGCGCGTTCATGGTGGTGAAGGTGCTTCAGAGAATCGCACAGAGTGGCAGTATCGTAATTATGTCCGTTCATCAACCAAGTTACCGAATCCTCGGACTTCTCGACCGCATGATCTTCTTGTCACGTGGCCAAACAGTTTACAGCGGTTCTCCGATGCAGTTACCGTTGTTCTTCGAGGAGTTTGGCCACCCAATACCGGAGAGTGATAACCGCACCGAATTCGCATTAGACCTAATTCGCGAGTTAGAAGGTTCACCCGGTGGAACAAAAAGTCTAGTTGAATTCAACAAATCATGGCAAAACATGACGAAGCTTCACCCTCCTGTGGTTGAACCAAACGGCATGTCGTTGAAGGAAGCTATAAGCGCAAGCATTTCCAGAGGGAAGTTAGTGTCCGGCGCCACCAACACCAGCGCCGACACGTCATCCATGGGGCCACCGTTTTGGATTGAGATGGCAACTTTGTCAAAACGATCGTTTACCAATTCGAGGAGAATGCCGGAACTGTTTGGAATAAGGTTGGGTGCTGTTATGGTTACTGGGTTCATTCTTGCTACGATGTTTTGGCAATTGGATAATTCTCCAAGAGGGGTGCAAGAAAGGCTTGGCTTTTTCGCTTTTGCTATGTCAACCACATTCTACACAACCGCTGATGCATTACCTGTGTTTCTTCAAGAACGTTATATTTTCATGAGGGAAACTGCTTACAATGCTTATAGGAGATCTTCCTATCTTTTCTCACATGCTCTTGTTGCTTTGCCTGCTTTGGTGTTTCTCTCATTGGCTTTTGCTGCGACGACGTTTTGGGCAGTGGGGCTTCATGGTGGGGTGTCGGGGTTCTTGTTTTACTTTCTGATCATATTTGCTTCCTTCTGGGCTGGGAACTCCTTTGTCACTTTCCTGTCTGGTGTGGTGCCTCATGTGATGTTGGGTTATACCATTGTGGTTGCTATTCTTGCTTATTTCTTGCTCTTCAGTGGGTTTTTCATCAACAGAGATAGGATCCCTGCTTATTGGATTTGGTTCCATTACTTGTCATTGGTGAAGTACCCTTATGAAGCTGTGTTACAGAATGAGTTTGATGATCCTGTGAAGTGCTTTGTGAGGGGGGTGCAGATTTTCGATAATACCCCTCTTGGGTCTGTGCCAAATGCACTCAAGTTGAATCTTTTGAAGAGCATGAGCAACACTCTGGGAACGAACATCACTGCCTCCACGTGTTTGACTACTGGTGCTGATATATTGCAGCAGAATGGGGTGACGGATTTGAGCAAGTGGAACTGTTTGTGGATCACTGTGGCTTGGGGTTTCTTCTTCAGGTTTCTATTCTACTTGTGTTTGTTGGTGGGTAGCAAGAATAAGAGGAGGTGA 2223 0.498 MSSRIVAENVTDTTSYLDLIELNDLTRRPAAGESPTLAQLLKHVGDVRKEATGDGSETPVHHALDVAGIEPRSLPFVLSFSNLTYSIKVSPKLSFSSILPGRRSRLGAAAESPEVGESVFTRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVALNGEALESRLLKMISAYVMQDDLLFPMLTVEETLTFAAEFRLPRSLSKSKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGMDIIHDPILLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRMIFLSRGQTVYSGSPMQLPLFFEEFGHPIPESDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQNMTKLHPPVVEPNGMSLKEAISASISRGKLVSGATNTSADTSSMGPPFWIEMATLSKRSFTNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSPRGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRSSYLFSHALVALPALVFLSLAFAATTFWAVGLHGGVSGFLFYFLIIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPAYWIWFHYLSLVKYPYEAVLQNEFDDPVKCFVRGVQIFDNTPLGSVPNALKLNLLKSMSNTLGTNITASTCLTTGADILQQNGVTDLSKWNCLWITVAWGFFFRFLFYLCLLVGSKNKRR* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03544 740 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 110 351 IPR003439 GO:0005524
Rops6g03544 740 FunFam ABC transporter G family member 6 116 342 - -
Rops6g03544 740 Pfam ABC-2 type transporter 308 383 IPR043926 GO:0140359
Rops6g03544 740 Pfam ABC transporter 127 279 IPR003439 GO:0005524
Rops6g03544 740 SMART AAA_5 136 328 IPR003593 GO:0016887
Rops6g03544 740 Pfam ABC-2 type transporter 438 644 IPR013525 GO:0016020|GO:0140359
Rops6g03544 740 ProSitePatterns ABC transporters family signature. 251 265 IPR017871 GO:0005524|GO:0016887
Rops6g03544 740 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 62 728 - -
Rops6g03544 740 Gene3D - 117 340 IPR027417 -
Rops6g03544 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 338 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03544 Rops-Chr6 60341720 60344315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03544 126 311 Calmodulin-binding Proteins AT2G36910 30.688 3.38e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03544 K05681 - gmx:100803658 1263.44