Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03540 ATGGCTGCAGCTGATGATGATTCATCCAAGAAAGGCTATGATAAAACAAAGTGTCCGAGAGCCTTTCCCACCATTGGGAAAGCAGTGCAGGATGCTGGATGTGATGCATCAGTTCTGTTAGACGACACAGCAAATTTCACTGGTGAGAAGAATTCTTTTCCCAATGCTAACTCCCTCAGGGGTTTTGAGGTCATAGACAAGATAAAATCTGAATTGGAGGACATGTGCCCTGGTGTTGTCTCTTGTGCTGACATCTTAGCCGTTGCTGCTAGGGACGCAGTTGTTGCTCTTGGTGGACCAAGATGGGAGGTACGATTAGGCAGAAATGATTCCACCACAGCAAGTTTAGATCAATCTAATTCAGACTTACCTGCTCCCTTTTTGGATCTTAATGGCCTTATCACTGCTTTCGCCAAGAAAAACTTCTCAGTCGAAGAAATGGTTACTTTGTCAGGAGCTCACACAATAGGCCTAGTGAGGTGCAGATTTTTCAGGGATAGGATTTACAACGAGACAAACATAGATCCCTCATTTGCAGCATCAATGCAAAAAAACTGTCCCTTTGAAGATGGTGATGACAATCTCTCTCCTTTCGATTCCACCAGTCCATTTAGATTTGACAATGGTTTCTACCAGAACTTGGTGAACCTAAAGGGTCTGGTTCACTCGGACCAACAACTCTTCGTGGATGGATCAGGACCCACAGACTCTCAAGTAGAGACATATAGCAGAAACATGAGAAAGTTCCAAAAAGACTTTGCAGACGCAATGTTGAAGATGAGTTTGCTTACCCCTCCACCTGGCTCCGTCGGTGAGATCAGGAAAAACTGCAGGGTTGTCAATCCACCTTCCACTGCCTAG 861 0.4495 MAAADDDSSKKGYDKTKCPRAFPTIGKAVQDAGCDASVLLDDTANFTGEKNSFPNANSLRGFEVIDKIKSELEDMCPGVVSCADILAVAARDAVVALGGPRWEVRLGRNDSTTASLDQSNSDLPAPFLDLNGLITAFAKKNFSVEEMVTLSGAHTIGLVRCRFFRDRIYNETNIDPSFAASMQKNCPFEDGDDNLSPFDSTSPFRFDNGFYQNLVNLKGLVHSDQQLFVDGSGPTDSQVETYSRNMRKFQKDFADAMLKMSLLTPPPGSVGEIRKNCRVVNPPSTA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03540 286 PANTHER PEROXIDASE 72-RELATED 32 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 FunFam Peroxidase 124 260 - -
Rops6g03540 286 PRINTS Haem peroxidase superfamily signature 98 110 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 PRINTS Haem peroxidase superfamily signature 199 214 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 PRINTS Haem peroxidase superfamily signature 146 161 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 PRINTS Haem peroxidase superfamily signature 80 97 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 ProSiteProfiles Plant heme peroxidase family profile. 33 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 Pfam Peroxidase 32 245 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 SUPERFAMILY Heme-dependent peroxidases 12 282 IPR010255 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 ProSitePatterns Peroxidases proximal heme-ligand signature. 146 156 IPR019793 -
Rops6g03540 286 Gene3D Peroxidase, domain 2 124 260 - -
Rops6g03540 286 Gene3D - 32 278 - -
Rops6g03540 286 CDD secretory_peroxidase 13 280 IPR033905 GO:0004601|GO:0042744
Rops6g03540 286 PRINTS Plant peroxidase signature 213 230 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 PRINTS Plant peroxidase signature 197 212 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 PRINTS Plant peroxidase signature 18 37 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 PRINTS Plant peroxidase signature 255 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g03540 286 PRINTS Plant peroxidase signature 145 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03540 Rops-Chr6 60307160 60307477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03540 13 281 Peroxidase AT5G05340 50.853 2.71e-97 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03540 K00430 - gmx:100802244 417.927