Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03528 ATGGCGTGGATTTTGCCATACGGTGACGTTGATTCCAATTTGAGAGCCATGGCCGGTCGTGCTGAGGGTTTTGGCCGCCTCGCCATCGGTGGCCTCCACGGTCCTCTCTATTCCGTTACCACCCTTGCAGATGATGGTCCCGGGTCCCTTCGTGATGGATGTCGTAGACAGGAGCCACTTTGGATTGTTTTTGAAGTTTCGGGTACAATTCATCTTTCATCATACCTGAGTGTGTCATCTTATAAGACAATAGATGGCAGAGGCCAGAGGATAAAATTGACTGGAAAGGGCTTAAGGCTGAAAGAATGTGAGCACATAATTATATGCAATCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAGATTAAACCAAATTCTAGGCATATATGGATAGATCGATGCAGCCTTCGTGATTATGATGATGGGTTAATAGACATTACAAGACAAAGCACAGATATTACTATATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTTATTGGAGCTGACCCATCTCACATTGGAGATAGATGCATCCGGGTGACAATTCATCATTGTTTCTTTGATGGAACACGGCAAAGACAACCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATTCTCTCAATGCAACATATATGAAGCAGGAAATAAGAAAAAGACTTTTGAATTTTATACTGAGAAGGCGGCAGATAAGGAAGAGGCAAAGTCTGGCATCATAGTATCTGAAGGAGACATGTTTCTTAATGATGCTCAGCCATGCTCACCAACAGAGTTCAAGGAACAATCCATGTTCCATCCTAGTGAACATTACCCCACATGGACAATGGAAGCAGCTGCACATTCTCTCAGAGAAGTCCTCCAGTTTTGTACAGGTTGGCAATCCATTTGTAGGCCAGAAGACCATATGGTCTTTAATTAA 999 0.4324 MAWILPYGDVDSNLRAMAGRAEGFGRLAIGGLHGPLYSVTTLADDGPGSLRDGCRRQEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIFSQCNIYEAGNKKKTFEFYTEKAADKEEAKSGIIVSEGDMFLNDAQPCSPTEFKEQSMFHPSEHYPTWTMEAAAHSLREVLQFCTGWQSICRPEDHMVFN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03528 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Rops6g03528 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Rops6g03528 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Rops6g03528 332 PANTHER PECTATE LYASE 18-RELATED 9 295 IPR045032 GO:0030570
Rops6g03528 332 Gene3D - 6 313 IPR012334 -
Rops6g03528 332 SMART amb_all 32 245 IPR002022 -
Rops6g03528 332 Pfam Pectate lyase 76 238 IPR002022 -
Rops6g03528 332 SUPERFAMILY Pectin lyase-like 18 285 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03528 Rops-Chr6 60160188 60163398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03528 42 330 Polysaccharide Lyase AT3G55140 82.007 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03528 K01728 - gmx:100802068 625.55