Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03526 ATGGCGAGGATCAAGGTTCACGAGTTGAGGCAAAAGACCAAGGCAGAGTTGTTGAATCAGCTCAAGGACCTCAAGGCAGAACTTGCCTTGCTCCGTGTTGCCAAGGTCACTGGTGGTGCACCCAACAAGCTCTCCAAGATAAAGGTGGTGAGGTTGTCCATTGCACAGGTTTTGACGGTGATTTCTCAGAAGCAGAAGGCTGCATTGAGGGAAGCTTACAAGAACAAGAAGTACTTGCCACTTGATCTCCGTCCCAAGAAGACCAGGGCTATTCGTAGAAGGCTCACCAAGCACCAGGCATCATTGAAGACTGAGCGAGAGAAGAAGAAAGAGATATATTTCCCAATGAGGAAATTTGCTATCAAGTTTCATGTTGGTGTCATTGGTTGTATTAAAGTTCATGTCATCAGACCTGGTGTTTCTCTTTTGAAGCAACTAGGATTTCAGCGAATTCTTATTTTCTGTCTTAAGGCACTATGA 480 0.4521 MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEIYFPMRKFAIKFHVGVIGCIKVHVIRPGVSLLKQLGFQRILIFCLKAL* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03526 159 NCBIfam 50S ribosomal protein L29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Rops6g03526 159 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Rops6g03526 159 FunFam 60S ribosomal protein L35 78 123 - -
Rops6g03526 159 FunFam 60S ribosomal protein L35 1 77 - -
Rops6g03526 159 PANTHER 60S RIBOSOMAL PROTEIN L35 1 122 IPR045059 GO:0000463|GO:0022625
Rops6g03526 159 Coils Coil 7 34 - -
Rops6g03526 159 Gene3D - 78 122 - -
Rops6g03526 159 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Rops6g03526 159 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Rops6g03526 159 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Rops6g03526 159 CDD Ribosomal_L29_HIP 8 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03526 Rops-Chr6 60150240 60151804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03526 1 122 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 89.344 5.30e-73 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03526 K02918 - aew:130764067 224.942