Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03516 ATGATGGTTTCGAGGGGGCTATTCGGGTGGTCCCCACCGCATATACAACCTCTCACGCCGGTTTCTGAGGTGTCGGAGCCGCCGGAGTCTCCGTCGCCGTATCTGGACCTTGGTGCCGAGACCTCCGCGTCGCAGCAGGTGGAGGTGGAGGAGGAGATTGAGGAGCCGGAGGAGATTGAGCCGCCGCCCGCCGCCGTTCCTTTCTCACGCCTCTTCGCCTGTGCTGACCGCTTCGACTGGTTTCTGATGGTCGTCGGCTCCGTCGCCGCCGCCGCTCACGGCACTGCTCTCGTCGTTTACTTGCACTACTTTGCCAAAGTTCTTCAGGTTCCTCAGCAGCAGGATCAGTTTCAAAGGTTCAAGGAGCTTGCTTTAACCATTGTTTATATTGCTGGGGGAGTTTTTGCCGCTGGTTGGATTGAGGTTTCATGTTGGATACTTACTGGAGAACGACAGACAGCTGTCATCAGATCAAAATATGTTCGAGTATTACTCAACCAAGATATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTGTTAAGTGATGTGTTGCTCATTCAGTCTGCTCTTAGTGAAAAGGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCGGGAGGAATATCAAATATATTCCTCCATAGGCTTGCAGAGAATATTCAAGATGCATATGCTGAAGCAGCCAGCATTGCTGAACAGGCAGTTTCCTATATAAGAACCCTGTATGCGTTTACAAATGAAACATTGGCTAAATACTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTCCAAGGGCTTGGACTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGTTCTTGGTTATTCATGGAAAAGCTCATGGTGGTGAAATTGTGACGGCTCTGTTTGCTGTGATTCTAAGTGGCTTGGGATTGAATCAAGCGGCGACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCTTATAGACTATTTGAGATGATAAGCAGGTCATCCTCATCTTTCAATCATGACGGCAGTGCTCCTGTTTCTGTGCAAGGAAATATAGAGTTTAGGAATGTTTATTTCAGTTATCTTTCTCGTCCTGAAATCCCTATTTTGAGTGGGTTTTATCTCACGGTTCCTGCTAAGAAAGCTGTGGCACTTGTCGGCAGAAATGGCTCTGGTAAAAGTAGTATTATTCCACTTATGGAGCGGTTCTATGATCCAACGTTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAGTGGCTGAGGAGCCAAATAGGACTGGTCACCCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATACCACCACTGATCAAATTGAAGAGGCTGCTAAAATTGCTCATGCACATACCTTTATCAGCTCGTTAGATAAAGGCTATTATACCCAGGTTGGCAGGGCTGGTTTAGCTTTGACGGAAGAACAGAAAATAAAACTTTCTATTGCTAGAGCTGTGCTTCTAAATCCATCCATTCTTCTGCTTGATGAGGTTACAGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCTCTGGATCTCCTTATGCTAGGACGCTCAACAATAATAATTGCTAGAAGGCTTAGTCTTATAAAGAATGCAGATTATATAGCTGTCATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAATTATTGACCCTGGATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCCACAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAGACTGCAGCTTTCCAAATTGAGAAAGATTCTTCAGAAAGTCATAGCTTCAAAGAACCGTCATCCCCTAGAATGATAAAGTCACCCTCTCTTCAAAGAATTACTGCAGTATTTCGGCCTTCAGATGGCTTCTTTAACTCACAAGAATCACCAAAAGTTCGGAGCCCACCCCCTGAGAAGATGATGGAAAATGGTCATTCTTTGGATTCAGCGGATAAAGAGCCCTCAATAAAAAGGCAGGATAGCTTTGAAATGAGACTACCAGAGTTACCAAAGATCGATGTTCAATCAGTGCATCGACAAACATCAAATGGTTCTGACCCAGAATCCCCTGTTTCACCTCTTTTAACATCTGATCCTAAAAATGAACGCTCTCATTCACAAACCTTTAGCAGACCAGATAGTCATTCTGATGATTTTTCAGTGACAATGAATGAAACAAAGGATGCACGGCATCGAGAACAGCCCTCACTTTGGAGGCTGGCAGAGCTTAGTTTTGCAGAATGGCTTTATGCTGTGTTAGGAAGCTTAGGTGCTGCTATCTTTGGTTCATTCAATCCCCTTCTTGCTTATGTTATTGGCCTGGTGGTGACAGCTTACTATAAAATTGATGAAACTCATCACCTACAAGGGGAGATAGACAAGTGGTGCTTGGTCATTGCCGGTATGGGTATTGTGACAGTTGTTGCCAACTTCTTGCAGCATTTCTACTTCGGTATTATGGGGGAGAAAATGACTGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAACTGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGCGCTTGGCAAATGATGCTACATTTGTGCGAGCTGCTTTCAGTAACCGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGCTTTTCTTATTGGTGTTTTGCTGCACTGGCGATTAGCACTTGTGGCTTTAGCAACACTTCCGGTCCTCTGTGTTTCTGCTGTTGCTCAGAAATTATGGCTTGCTGGATTTTCAAGGGGCATACAGGAAATGCACCGAAAGGCATCTTTGGTTCTTGAAGATGCTGTTAGAAATATTTACACTGTTGTTGCATTTTGTGCTGGTAATAAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCATTATGCATAAAAAACAGTTATGTGGATCCACCTACTGCACTCAAGGAGTACATGGTTTTCTCATTTGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTCAAGCGACGCAAATCTCTCATTTCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCCAATGTATATGGAAGCATTGAGTTGAAAAATGTTGATTTTTGTTACCCTTCTCGGCCAGAAGTGTTGGTATTAAGCAATTTTAGTCTCAAAGTCAGTGGGGGGCAAACAATTGCCGTTGTGGGAGTTTCAGGGTCAGGAAAGAGCACTATAATATCTTTGATAGAGAGATTTTATGATCCAGTTGCTGGCCAAGTTTTACTAGATGGGAGGGATTTAAAACTTTATAATTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTCCAGCAGGAACCTATTATCTTCTCAACAACCATCAGGGAAAACATCATATATGCCAGGCATAATGCCAGTGAAGCTGAAATGAAAGAGGCCGCAAGAATAGCAAATGCTCATCATTTCATTAGTAGCCTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTAACTCCAGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTGCTGAAGAATGCACCTATCTTGTTGTTGGATGAAGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTAGTGCAAGAGGCTCTAGACACCCTAATAATGGGTAACAAGACCACTATTTTAATAGCGCACAGGGCTGCGATGATGAGGCATGTGGACAACGTAGTAGTTCTTAATGGGGGACGGATAGTGGAGGAGGGGACCCATGATTCGTTGGTGGCGAAGAATGGTCTGTATGTCCGATTAATGCAACCTCATTTTGGTAAGACTCTGCGTCAGCATCGGCTTGTTTAG 4098 0.4329 MMVSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDLGAETSASQQVEVEEEIEEPEEIEPPPAAVPFSRLFACADRFDWFLMVVGSVAAAAHGTALVVYLHYFAKVLQVPQQQDQFQRFKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVRVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSAPVSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTTDQIEEAAKIAHAHTFISSLDKGYYTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVRNYKETAAFQIEKDSSESHSFKEPSSPRMIKSPSLQRITAVFRPSDGFFNSQESPKVRSPPPEKMMENGHSLDSADKEPSIKRQDSFEMRLPELPKIDVQSVHRQTSNGSDPESPVSPLLTSDPKNERSHSQTFSRPDSHSDDFSVTMNETKDARHREQPSLWRLAELSFAEWLYAVLGSLGAAIFGSFNPLLAYVIGLVVTAYYKIDETHHLQGEIDKWCLVIAGMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNETGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAFLIGVLLHWRLALVALATLPVLCVSAVAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKFLLFACNALLLWYTALCIKNSYVDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVSGGQTIAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNVVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKTLRQHRLV* 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03516 1365 Gene3D - 1106 1353 IPR027417 -
Rops6g03516 1365 Gene3D - 390 637 IPR027417 -
Rops6g03516 1365 SUPERFAMILY ABC transporter transmembrane region 811 1101 IPR036640 GO:0005524|GO:0016020
Rops6g03516 1365 Gene3D ABC transporter type 1, transmembrane domain 70 651 IPR036640 GO:0005524|GO:0016020
Rops6g03516 1365 FunFam ABC transporter B family member 6 764 992 - -
Rops6g03516 1365 CDD ABC_6TM_Pgp_ABCB1_D2_like 819 1099 - -
Rops6g03516 1365 MobiDBLite consensus disorder prediction 739 800 - -
Rops6g03516 1365 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 375 - -
Rops6g03516 1365 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 824 1029 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g03516 1365 MobiDBLite consensus disorder prediction 14 42 - -
Rops6g03516 1365 SUPERFAMILY ABC transporter transmembrane region 69 375 IPR036640 GO:0005524|GO:0016020
Rops6g03516 1365 FunFam ABC transporter B family member 20 1066 1113 - -
Rops6g03516 1365 Gene3D ABC transporter type 1, transmembrane domain 765 1027 IPR036640 GO:0005524|GO:0016020
Rops6g03516 1365 PANTHER ABC TRANSPORTER B FAMILY 48 836 IPR039421 -
Rops6g03516 1365 MobiDBLite consensus disorder prediction 656 726 - -
Rops6g03516 1365 SMART AAA_5 1143 1330 IPR003593 GO:0016887
Rops6g03516 1365 SMART AAA_5 427 606 IPR003593 GO:0016887
Rops6g03516 1365 Pfam ABC transporter 1134 1282 IPR003439 GO:0005524
Rops6g03516 1365 Coils Coil 246 266 - -
Rops6g03516 1365 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 367 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g03516 1365 Pfam ABC transporter 421 565 IPR003439 GO:0005524
Rops6g03516 1365 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 400 635 IPR003439 GO:0005524
Rops6g03516 1365 Pfam ABC transporter transmembrane region 85 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g03516 1365 Pfam ABC transporter transmembrane region 830 1029 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g03516 1365 FunFam ABC transporter B family member 20 70 402 - -
Rops6g03516 1365 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1116 1353 IPR003439 GO:0005524
Rops6g03516 1365 FunFam ABC transporter B family member 20 1106 1355 - -
Rops6g03516 1365 Gene3D ABC transporter type 1, transmembrane domain 1028 1105 IPR036640 GO:0005524|GO:0016020
Rops6g03516 1365 FunFam ABC transporter B family member 20 390 637 - -
Rops6g03516 1365 MobiDBLite consensus disorder prediction 776 800 - -
Rops6g03516 1365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1105 1352 IPR027417 -
Rops6g03516 1365 MobiDBLite consensus disorder prediction 747 775 - -
Rops6g03516 1365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 634 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03516 Rops-Chr6 60046997 60056113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03516 53 693 Calmodulin-binding Proteins AT2G36910 43.405 1.10e-161 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03516 K05658 - gmx:100799399 2479.52