Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03513 ATGGTTCTATCGAACAAGAAGCTGAAACAGAAGCTTAGAGCTGAGTTAACCCAAAACCAAAGCAACTCCAACGTTGTTGATGCCCCTTCTTCTTCTGACTCTCTCAAACATCTTCTGGACTCTGCCGCTCTCACACCCACATTGTCCAAGCGAGAGAAACGCCGAAAGCTTCGATCTTTGCAACCTACCCCTTCAGAAGCTGCTGATGAAGGAACGAACAAGGAAAGTGGGACTGAGGGTTTGGCCAATAAGAAGAAGGAAAAGAGGAAGAGGAGGAAGGCAAAGGATGATGATGATGATGATGTGGGTAATGGGGATGCCAACGAATCAAAGAACAAGAAGCAGAAGAAGCTGAAGAAGAAGAAAAAGAAGAAGGCCACAACAACAGAGGAAAACAGTGCTAATCATGGAGGGGAAATGCCAGAGGCTACAGGGTTAACCACGACCAACACCACTACCAGTTTAGAAAATGGTGATGTTCCCACAAAAGTTTATGTTGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGAAGCTATTTTGAAAGCTGTGGCACCATAACTGAAATGGATTGCATGACTTTTCCTGAAAGTGGGAAGTTCAGAGGAATTGCCATTATTAGTTTTAAGACTGAAGCAGCTGCCAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACACGAACCAGCAACAAAGCATCAGATTTTGCTCCAGAAATGTTGGAGGGATATAACAGAATATATGTTGGAAATTTGTCATGGGATATAACTGAGGAAGAACTGAGGAAATTCTTCTCTAATTGCAAGATCACATCCCTACGATTTGGTATGGACAAGGAGACTGGAGAATTCCGAGGGTATGCACATGTGGATTTCAGTGATAGTGAGTCACTGAAAACAGCACTTACATTGGACCAAAATGTTTTGTTTGGAAGACCCGTCAGGATAAGTTGTGCAGTTCCTTTGAAGAAAAAACCTGCAACCGATACAAGCTATGTGCCTACAATTAATGGCGTTAATGGTGAGAAATTAAATTCCACAATTAATGGAGTTAATGGTGAGAAATCAGATTCCACTGAAAGTCGCAAGATGAAGAGGAGGACATGCTACGAGTGTGGTGAAAAAGGACATATTGGCTCCCTATGTCCAAAGAAACAAACAGTCACTTCAACTACAATTTAA 1221 0.421 MVLSNKKLKQKLRAELTQNQSNSNVVDAPSSSDSLKHLLDSAALTPTLSKREKRRKLRSLQPTPSEAADEGTNKESGTEGLANKKKEKRKRRKAKDDDDDDVGNGDANESKNKKQKKLKKKKKKKATTTEENSANHGGEMPEATGLTTTNTTTSLENGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEMDCMTFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRTSNKASDFAPEMLEGYNRIYVGNLSWDITEEELRKFFSNCKITSLRFGMDKETGEFRGYAHVDFSDSESLKTALTLDQNVLFGRPVRISCAVPLKKKPATDTSYVPTINGVNGEKLNSTINGVNGEKSDSTESRKMKRRTCYECGEKGHIGSLCPKKQTVTSTTI* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03513 406 Gene3D - 61 248 IPR012677 -
Rops6g03513 406 SUPERFAMILY RNA-binding domain, RBD 152 243 IPR035979 GO:0003676
Rops6g03513 406 Gene3D - 362 405 - -
Rops6g03513 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 60 239 - -
Rops6g03513 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 327 IPR000504 GO:0003723
Rops6g03513 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 230 IPR000504 GO:0003723
Rops6g03513 406 CDD RRM1_PHIP1 164 235 IPR034361 -
Rops6g03513 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 239 IPR000504 GO:0003723
Rops6g03513 406 MobiDBLite consensus disorder prediction 142 159 - -
Rops6g03513 406 SMART rrm1_1 259 330 IPR000504 GO:0003723
Rops6g03513 406 SMART rrm1_1 163 235 IPR000504 GO:0003723
Rops6g03513 406 SUPERFAMILY Retrovirus zinc finger-like domains 366 401 IPR036875 GO:0003676|GO:0008270
Rops6g03513 406 Coils Coil 111 131 - -
Rops6g03513 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 334 IPR000504 GO:0003723
Rops6g03513 406 Gene3D - 251 342 IPR012677 -
Rops6g03513 406 MobiDBLite consensus disorder prediction 15 159 - -
Rops6g03513 406 MobiDBLite consensus disorder prediction 92 113 - -
Rops6g03513 406 ProSiteProfiles Zinc finger CCHC-type profile. 382 397 IPR001878 GO:0003676|GO:0008270
Rops6g03513 406 SUPERFAMILY RNA-binding domain, RBD 251 350 IPR035979 GO:0003676
Rops6g03513 406 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03513 Rops-Chr6 60022439 60024596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03513 162 332 Eukaryotic Initiation Factors Gene Family AT2G36660 29.282 6.24e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03513 - - gmx:100814693 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03513 6 60022439 60024596 Rops6g03513 6 60022439 60024596 ECH