Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03510 ATGAAGAGAGAAAGAGAAGTTGATCGCATAACCATGGCCAACTACTTGATGTTGCTATCTCGTAGTAGTAAATATGAAACCACCAACTTGGACTCTTCAAACAACCGTGTCTTTGTGTGCAAGACATGTAACCGTGAGTTCCCATCTTTTCAGGCACTTGGTGGCCACCGTGCAAGCCACAAGAAGCCAAGGTTGATGGGAGAATTGCTTCATGGTTCACCCCCAAAGCCTAAAACTCATGAGTGTTCCATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTGGGTGGCCACATGAGGAGACACAGAACAACAGCTTCAAATGGAAACATGCAAAGTTCTATGACTACGAGTAGCAGTAGTGATGATGCTTCAGCAAACATGAAGAAGGGTAACAGCAAGAGAGTTTTGTTTCCTGATTTGAATTTGACACCCTTAGAGAATGATTTGGTGTTTCTCAAGATTGGACAAGCAATTCCTTTGGTGGATTGTTTCAATTGA 501 0.4271 MKREREVDRITMANYLMLLSRSSKYETTNLDSSNNRVFVCKTCNREFPSFQALGGHRASHKKPRLMGELLHGSPPKPKTHECSICGLEFAIGQALGGHMRRHRTTASNGNMQSSMTTSSSSDDASANMKKGNSKRVLFPDLNLTPLENDLVFLKIGQAIPLVDCFN* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03510 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Rops6g03510 166 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Rops6g03510 166 SMART c2h2final6 38 60 IPR013087 -
Rops6g03510 166 SMART c2h2final6 80 102 IPR013087 -
Rops6g03510 166 MobiDBLite consensus disorder prediction 103 128 - -
Rops6g03510 166 MobiDBLite consensus disorder prediction 103 127 - -
Rops6g03510 166 SUPERFAMILY beta-beta-alpha zinc fingers 36 102 IPR036236 -
Rops6g03510 166 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Rops6g03510 166 Gene3D Classic Zinc Finger 18 106 - -
Rops6g03510 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Rops6g03510 166 PANTHER ZINC FINGER PROTEIN ZAT5 6 148 - -
Rops6g03510 166 Pfam C2H2-type zinc finger 37 63 - -
Rops6g03510 166 Pfam C2H2-type zinc finger 80 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03510 Rops-Chr6 59995308 59995989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03510 12 159 C2H2 Transcription Factor Family AT2G28710 50.641 4.44e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g03510 zf-C2H2_6 1.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03510 - - gmx:100816598 224.172