Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03506 ATGGTGAACGTGATGGAGTGGCAGAAACAGTTGCAGAGGTGGCAGCAGCAGAATGGGAATGTTAATGTTGATGTTAATGGAGATATGATGTATGTGAAGGTTATGACTGATGAACAGTTGGAAACTCTGAGGAAACAAATTGCAGTTTATGCCACCATTTGTGAGAAACTTATTGACATGCATAGAACTCTCTCTGCTCAGCAGGATCTTGCAGGGGTTAGGCTGGGAAATATATACTGTGATCCATTGATGACATCCACTGGTCACAAAATAACATCCAGACAGAGGTGGACTCCTACACCAGTGCAGCTTCAGATTCTTGAGCGTATATTTGATCAGGGAAATGGAACTCCAAACAAGGAAAAAATCAAGGAGATTACTGCTGAACTTGGCCAGCATGGTCCAATTTCTGAAACAAATGTCTATAATTGGTTCCAGAACAGGCGTGCTAGATCAAAAAGAAAGCTGCAAAATGTGGCACCTGGTAACACTGAATCAGAAGTAGAGACTGAGGTTGATTCTAAGGATAAGAAAACAAAACCAGAGGAATTTCAGTCACAACAAAATGCAACTGTAGGGGCTGAGAAATTCTGCTTCCAGAACCCTGAATTAAGTTCTGACTTGCAGTGCTTGAATCCAGACTCTAATAAACCATATTCCATGTTCCCATCAGATGGCAATCTAAGATCTACAAGAAATTTGAATCGCATGTCTGTTTTTGATGAGGTGCTATCAAACTCAAGGAGTGAGTATCTAGCTGGAAAAATGGCAGTAACTGGGGATTACAATTTATACCAGCAAGCAGGAGACTACAATTTGGCAGGTTGA 828 0.4118 MVNVMEWQKQLQRWQQQNGNVNVDVNGDMMYVKVMTDEQLETLRKQIAVYATICEKLIDMHRTLSAQQDLAGVRLGNIYCDPLMTSTGHKITSRQRWTPTPVQLQILERIFDQGNGTPNKEKIKEITAELGQHGPISETNVYNWFQNRRARSKRKLQNVAPGNTESEVETEVDSKDKKTKPEEFQSQQNATVGAEKFCFQNPELSSDLQCLNPDSNKPYSMFPSDGNLRSTRNLNRMSVFDEVLSNSRSEYLAGKMAVTGDYNLYQQAGDYNLAG* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03506 275 SUPERFAMILY Homeodomain-like 92 156 IPR009057 -
Rops6g03506 275 MobiDBLite consensus disorder prediction 153 187 - -
Rops6g03506 275 MobiDBLite consensus disorder prediction 168 183 - -
Rops6g03506 275 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 272 IPR044559 GO:0003700
Rops6g03506 275 SMART HOX_1 92 159 IPR001356 GO:0003677
Rops6g03506 275 Pfam Homeodomain 94 154 IPR001356 GO:0003677
Rops6g03506 275 CDD homeodomain 94 155 IPR001356 GO:0003677
Rops6g03506 275 Gene3D - 96 160 - -
Rops6g03506 275 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03506 Rops-Chr6 59953842 59956400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03506 4 275 Wox Gene Family AT4G35550 51.007 9.53e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops6g03506 Homeodomain 6.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03506 - - pvu:PHAVU_007G011600g 425.631