Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03499 ATGCAACTCAAGAGGGCACTTGCAAGCATGTTTGGCTTCACCCTCTTGGTTTTCTTTTCTTATGATATAGCCAAGGAGATGGAATTCCCAGATATTCCATCCCTACCTGTGGCCAGGTTTGAGGATTTGAGAAGCCATGAGGAGATTTGCTCCATTTGCTTGGTGGAGTTTGAAGGGGAAGATGCAGTGACCAAGCTAGGAAGATGTGGCCATGTGTTCCATCTCAATTGCATTGAGCAATGGATAGATCGTAATCAATTCTCTTGCCCACTTTGTAGGTCCTTTTTGTTTTATCAAAATCATAACCATACAAATAAATAG 321 0.4206 MQLKRALASMFGFTLLVFFSYDIAKEMEFPDIPSLPVARFEDLRSHEEICSICLVEFEGEDAVTKLGRCGHVFHLNCIEQWIDRNQFSCPLCRSFLFYQNHNHTNK* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03499 106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 96 IPR013083 -
Rops6g03499 106 Pfam Ring finger domain 49 93 IPR001841 -
Rops6g03499 106 PANTHER RING ZINC FINGER PROTEIN-RELATED 34 96 - -
Rops6g03499 106 SUPERFAMILY RING/U-box 33 99 - -
Rops6g03499 106 ProSiteProfiles Zinc finger RING-type profile. 50 93 IPR001841 -
Rops6g03499 106 SMART ring_2 50 92 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03499 Rops-Chr6 59855313 59855633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03499 40 97 C3H Transcription Factor Family AT4G38140 62.712 3.24e-21 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03499 - - pvu:PHAVU_007G012000g 130.568