Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03492 ATGGCACCGCAGGGAAGGAAAAGAGTTGATGCGGTTGATTCTCGTGCTGCTTCTGTTCTTGTTCGTGGCAAAGATGGAAGTGCTTTTGCCAAATGCGAAGAGTGCAACAAGAATGTGCCGGTAGCACTAATCGACATGCACAATTGCAGCCTCGAAGCTAGAATTAAAATGAACCTTGATGCTCAGGTTGTTGAACAGTCTACTGAAGCCAAGAAGCCAGAAAGGAAAAAGCCCCAATCTAAGGAACCGAAGGCAAAAAAGGCTAAAGTGGAAAAAGAGAAGAAGGTCAAGGATCCTAACATGCCCAAGCGTCCTCCCACTGCCTTCTTTCTCTTCTTGGATGATTTTAGAAAAACTTTTAAGGAAGCAAACCCTGGTTCAAAGGATGTTAAAAGGGTTGCCAAAGAGGCTGGTGAGAAGTGGAAGTCTATGACTGATGAAGAGAAGAAACCTTATTTGGATAAAGTTGCTGAACTCAAGGAAGAATATGAGAAGGCTAAGGCAAACTATAATGCTGCTGAAGATGAAGATAAAGAAGGGTCTGATAATGATAAGGAAGCCCCTGCAGGAGAAGTGGAGGAGATAACAGATGAAGAGTAG 600 0.435 MAPQGRKRVDAVDSRAASVLVRGKDGSAFAKCEECNKNVPVALIDMHNCSLEARIKMNLDAQVVEQSTEAKKPERKKPQSKEPKAKKAKVEKEKKVKDPNMPKRPPTAFFLFLDDFRKTFKEANPGSKDVKRVAKEAGEKWKSMTDEEKKPYLDKVAELKEEYEKAKANYNAAEDEDKEGSDNDKEAPAGEVEEITDEE* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03492 199 CDD HMG-box_AtHMGB1-like 103 163 - -
Rops6g03492 199 MobiDBLite consensus disorder prediction 64 107 - -
Rops6g03492 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Rops6g03492 199 MobiDBLite consensus disorder prediction 123 148 - -
Rops6g03492 199 MobiDBLite consensus disorder prediction 67 101 - -
Rops6g03492 199 MobiDBLite consensus disorder prediction 167 199 - -
Rops6g03492 199 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Rops6g03492 199 MobiDBLite consensus disorder prediction 167 190 - -
Rops6g03492 199 SMART hmgende2 101 172 IPR009071 -
Rops6g03492 199 SUPERFAMILY HMG-box 89 171 IPR036910 -
Rops6g03492 199 Gene3D High mobility group box domain 85 186 IPR036910 -
Rops6g03492 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 5 187 - -
Rops6g03492 199 Coils Coil 149 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03492 Rops-Chr6 59785312 59786740 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Rops6g03492 HMG_box 1.4e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03492 K25507 - gmx:100810345 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03492 6 59785312 59786740 Rops6g03492 6 59785312 59786740 ECH