Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03491 ATGCTTGATAATGTGGACCATCTCCATGATTTCATCAACTCAACGTGGACACTATGTTCTCTTCTAGGTGGCTGGGTTTCTAGTCTAATATCAAAACCTTATAGAAAAGTGGTTGGTTCAGCATTTGATGGTTCTCTTTCTAGGTTGGCTGAGGAAAGAGAAAATTGTTATTTAGATTTCATGGATGATTGTATATATATTAGTTCATCGGATGATGACTTGGAGGAGATAGAAGATCCGAAGAGGAGTCTCCCACGGGCTGCACCTGAAAGGAATTCAGATTATGGTGGGTGGTCTAGGCAGGATAGTTCTTCAAGAGGGGCAAATAGTTCAAACACAAGCTCGTCTAATGCTTATCATCATTCTCAAGTCAAGCCCCATGCTCAACCTGTGCCCAGCAAGAATACGCTGAACCACAGAGTTGAACCTTCCTATCATACCCAGAATGGAAACACAAGTCAGCATCAGACAGTTAACCCCCAAATTTCTAATACTTATGGTGCTGATTATGAGAAAATGTCATCTCAACAAGCTTTCAAGAGGGCCCTTCCGTCTTCTTTTCAACCATCTGTGACAAGGGCTCTTCCATCTTCGTCATTTGCATCAGATAGCAGATTAAGCAACTTAAAAGATAACATAAGCAGCAGTCAGTTTCATGATGCATATAGGAATCGTCGCCATGGAGTAGGACCTAGCACGTCCAGTGACAGGGGCTATATACGTGACAGTTTTAGCAGAGGTAATGATGAAGATCGTTTCATGCATCAGAATGGTGGGATTAGGATTCTTCCTACATCTTTGATGCTTGGAAAAGCTACAACTTCACCGTTTGCTAGTTCCAGTGAATCTGTGTACCGTTCTGGACCTGCTGATGACAGGGCTTCTGACGAGAGGCTAATTTATGAGGCAGCATTGCAGGATCTCTATCAACCAAAACAAGAAGCTAAGATAGCTGAAGGTCTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGCATTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAATGATTGCCCTCATCCAAATGCAAAGGGCATTACAGTCAAAATCGAAAATAGATGATACATGCAATCATAAAACTGAAGCCCTGAATTTGGATGATGATGATGATAATAATGGTAGTATTGATGTGGAAAAGCTTAAAAAGAACGAAGAATCTGATGATATAAAACTTAGTACAGAACCAAGTAGTTCAACACGGGCACCGGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTTTGCCCTGCAAGTGTTCTTCGGCAGTGGGCGAGGGAGCTTGACGACAAAGTTGGAGATGAAAAGCTTTCCGTTTTGATTTATCATGGGGGAAGTAGGACAAAGGATCCTGTTGAGCTAGCGAAATTTGATGTGGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCAAAACAACCGTTGGTTGAGGATGATGATATTGATGAAAAAAATGGGGAAAAATTTGGCTTATCCTCCGAGTTTTCTGTCAGTAAAAAGAGGAAAAAGTCATGTAATGGAAGTAAGAAGGGTAAAAGAGGTGGAAAGGGAATTGACAGTTCTTTTGATGGTGCTTGTGGTCCTCTTGCTAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATTAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAATTCCATCGATGATTTGTATAGCTACTTTAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTTCCAATATCCAGAAATTCTGTTCAAGGTTACAAGAAACTCCAAGCAGTTTTGAGGGCCATAATGCTTCGTCGTACAAAAGGAACTTTGATTGAAGGAAAGCCAATAATCAATTTGCCTCCTAAAACAATTCAGTTGAGTAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACAACCAGTTGGAAGCAGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCTGGCACAGTGAATCAGAACTATGCAAATATTCTTCTAATGCTTTTACGTCTCCGTCAGGCTTGTGACCACCCACTTCTAGTTAAACATTATAATTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAGGGAGATGCTGATTAATCTATTTAAAAGCTTGGAAACAGGCTTGCCTATATGTCATGTTTGCAATGATCCACCTGAAGACCCTGTCATTACGATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCTGAATACTTGACAGGTGATGATAACATGTGCCCTGCAGTTGATTGTAAAGAACAAATTGGTGATGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCCTCTCTGATGATCTTGGTGGTAGTAGTTCTGTAAATTCGCATGTTATTGATTATTCACTAGTACAGCAGAGTGAATACAGTTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCAGTCAAATTGTATATTGAAGACTCCTTGTTCTGGCTTACTGAATTCCTCTGGAGGCAGTAGAGTTTCACTGTCTTCTGATGAGTCATATATTGAAAATTGCGATTCAGATGTTAGGGTCACAAAACACACAAGAATACATTCAGAGTCCACAACTGAAGGACCAATAAAGGCCATAGTTTTTTCCCAATGGACTAGCATGTTGGACTTAGTTCAGATATCATTGGAACAGTCTGGTATACAATACAGGAGACTTGATGGTAGGATGACTCTGATTGCGAGGGACAAGGCTGTTAAGGATTTCAATACTGATCCTGAGATTACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTCATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAGGCAGTTGATCGAGCTCATAGAATTGGACAGACTCGCCCTGTCACTGTGACCCGGATCACTATTAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGACCATGCTGGCAGTTCAGCAAATCGCCTTACAGTGGATGATCTTAAATATCTTTTCATGGTCTAG 3234 0.4088 MLDNVDHLHDFINSTWTLCSLLGGWVSSLISKPYRKVVGSAFDGSLSRLAEERENCYLDFMDDCIYISSSDDDLEEIEDPKRSLPRAAPERNSDYGGWSRQDSSSRGANSSNTSSSNAYHHSQVKPHAQPVPSKNTLNHRVEPSYHTQNGNTSQHQTVNPQISNTYGADYEKMSSQQAFKRALPSSFQPSVTRALPSSSFASDSRLSNLKDNISSSQFHDAYRNRRHGVGPSTSSDRGYIRDSFSRGNDEDRFMHQNGGIRILPTSLMLGKATTSPFASSSESVYRSGPADDRASDERLIYEAALQDLYQPKQEAKIAEGLLSVSLLRHQKIALHWMLQKETKSLHCLGGILADDQGLGKTISMIALIQMQRALQSKSKIDDTCNHKTEALNLDDDDDNNGSIDVEKLKKNEESDDIKLSTEPSSSTRAPGRKRPAAGTLVVCPASVLRQWARELDDKVGDEKLSVLIYHGGSRTKDPVELAKFDVVLTTYSLVTNEVPKQPLVEDDDIDEKNGEKFGLSSEFSVSKKRKKSCNGSKKGKRGGKGIDSSFDGACGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSVQGYKKLQAVLRAIMLRRTKGTLIEGKPIINLPPKTIQLSKVDFSIEERAFYNQLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKHYNSDPVGKDSVEMAKRLPREMLINLFKSLETGLPICHVCNDPPEDPVITMCGHVFCYQCVSEYLTGDDNMCPAVDCKEQIGDDLVFSKATLRSCLSDDLGGSSSVNSHVIDYSLVQQSEYSSSKIKAVLEVLQSNCILKTPCSGLLNSSGGSRVSLSSDESYIENCDSDVRVTKHTRIHSESTTEGPIKAIVFSQWTSMLDLVQISLEQSGIQYRRLDGRMTLIARDKAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGSSANRLTVDDLKYLFMV* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03491 1077 Gene3D - 297 388 IPR038718 -
Rops6g03491 1077 SMART ultradead3 322 634 IPR014001 -
Rops6g03491 1077 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 341 617 IPR014001 -
Rops6g03491 1077 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 906 1072 IPR001650 -
Rops6g03491 1077 MobiDBLite consensus disorder prediction 96 160 - -
Rops6g03491 1077 MobiDBLite consensus disorder prediction 391 436 - -
Rops6g03491 1077 Gene3D - 421 509 IPR038718 -
Rops6g03491 1077 CDD SF2_C_SNF 920 1028 - -
Rops6g03491 1077 Pfam Helicase conserved C-terminal domain 921 1019 IPR001650 -
Rops6g03491 1077 MobiDBLite consensus disorder prediction 402 419 - -
Rops6g03491 1077 ProSiteProfiles Zinc finger RING-type profile. 771 807 IPR001841 -
Rops6g03491 1077 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 534 667 - -
Rops6g03491 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 665 1076 IPR027417 -
Rops6g03491 1077 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 419 507 - -
Rops6g03491 1077 Gene3D - 548 667 IPR038718 -
Rops6g03491 1077 Pfam Zinc finger, C3HC4 type (RING finger) 771 807 - -
Rops6g03491 1077 SUPERFAMILY RING/U-box 768 808 - -
Rops6g03491 1077 Pfam SNF2-related domain 329 732 IPR000330 GO:0005524|GO:0140658
Rops6g03491 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 761 821 IPR013083 -
Rops6g03491 1077 SMART ring_2 771 809 IPR001841 -
Rops6g03491 1077 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 108 1076 - -
Rops6g03491 1077 MobiDBLite consensus disorder prediction 75 160 - -
Rops6g03491 1077 MobiDBLite consensus disorder prediction 217 251 - -
Rops6g03491 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 655 IPR027417 -
Rops6g03491 1077 Gene3D - 670 1076 IPR027417 -
Rops6g03491 1077 CDD DEXDc_SHPRH-like 326 655 - -
Rops6g03491 1077 SMART helicmild6 936 1019 IPR001650 -
Rops6g03491 1077 ProSitePatterns Zinc finger RING-type signature. 786 795 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03491 Rops-Chr6 59752803 59764449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03491 61 977 RAD5 or RAD16-like Gene Family AT1G50410 55.437 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops6g03491 SNF2_N 1.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03491 - - lang:109335781 1585.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03491 6 59752803 59764449 Rops6g03491 6 59752803 59764449 ECH