Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03475 ATGTCGGAATCACCGTCTCAGCCACCGCTCCCACCCACGGAGGCGCCACCTCCGCAATACTGGTGCTACCACTGCGAAAAACGCGTCTCCATCGAAACACTCCCCAATCTCCCCGACATAATCTGCGGCGAGTGCAAAAACGGCTTCGTCGAATCCATCCCAGTACCCTCTCCCTCTCGTTCTTCTCTCTCTCCCACTCGATCCCCTTCTCCTTCCTCCGATGACCCTCTCTTCGGCCCCCACTTCCTCCACGTCCTTCGCCTAATCGCTCAATCGGCGCGTGACGACGACGATGACGCTTCTCCTCCCCCTCCCCCTAACCGTTCACCGGATAACGATTTCCTCAGGATCGAACTTGGTGGCTGGGACAATAACGACGAAAACGCCGTCGAGTTTCACAACGATGAACACGAAGATCGATCCATTAACGAGGATCCGAACGAAAATGATGAAGATCTGAGGCGAAGGAGGCGTGAACTTCTTCGCCTTCGAATTAGGGATTTGGCGACCCGAACCCGAAGCATGCGGAACCGGATCTTGGATTGGGCCGAGATTCTTATGGGCCTTGAAGACAATTCCATTGAGTTCCGTCTTCAGATGCCGGAATCCGACCGGTACGTCGGGAATCCCGAGGATTACGTCGACTCGGCGGAGTACGAGGCGTTGTTGCAGACGCTGGCGGAGAGTGATGGTGGTGGGAGGAGGGGAGCACCGCCGGCGTCGAAGTCGGCGGTGGAGGCTTTGCCGACGGTGAAGATCGTGTCGGAGAGTGAAACTGTGGTGTGTGCTATTTGTAAGGATTTGGTGAATGTTGGAGAATTAGCGAAGAAATTACCATGTGGGCATCAGTATCATGGAGATTGCATTATTCCATGGTTGAGTTCTAGAAATTCTTGCCCTATTTGTAGGTTTGAGCTTCCTACGGATGATAAGGAGTACGAGGAAGAGAGAGTGGTTAGTGCTTCTGATGGGGCTTCTGGTTCGGGTCCTGGTGGTGGAGGTACCACCATTTGA 1014 0.5414 MSESPSQPPLPPTEAPPPQYWCYHCEKRVSIETLPNLPDIICGECKNGFVESIPVPSPSRSSLSPTRSPSPSSDDPLFGPHFLHVLRLIAQSARDDDDDASPPPPPNRSPDNDFLRIELGGWDNNDENAVEFHNDEHEDRSINEDPNENDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQMPESDRYVGNPEDYVDSAEYEALLQTLAESDGGGRRGAPPASKSAVEALPTVKIVSESETVVCAICKDLVNVGELAKKLPCGHQYHGDCIIPWLSSRNSCPICRFELPTDDKEYEEERVVSASDGASGSGPGGGGTTI* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03475 337 MobiDBLite consensus disorder prediction 317 337 - -
Rops6g03475 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 139 307 - -
Rops6g03475 337 Pfam Ring finger domain 262 303 IPR001841 -
Rops6g03475 337 ProSiteProfiles Zinc finger RING-type profile. 262 303 IPR001841 -
Rops6g03475 337 FunFam E3 ubiquitin-protein ligase RING1-like 225 309 - -
Rops6g03475 337 Pfam zinc-ribbon 19 53 IPR039525 GO:0061630
Rops6g03475 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 309 IPR013083 -
Rops6g03475 337 MobiDBLite consensus disorder prediction 55 73 - -
Rops6g03475 337 SUPERFAMILY RING/U-box 256 309 - -
Rops6g03475 337 MobiDBLite consensus disorder prediction 94 120 - -
Rops6g03475 337 MobiDBLite consensus disorder prediction 55 77 - -
Rops6g03475 337 SMART ring_2 262 302 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03475 Rops-Chr6 59422548 59423787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03475 173 315 C3H Transcription Factor Family AT5G01980 49.333 1.41e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03475 - - gmx:100780991 448.743