Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03465 ATGTCGAGCCCCGACGGTACCGCTAACGGGTCAATGATTGACCCACAGCGTCAGCAACAGTTGGCCGTCAAGAAACCCCCCTCTAAGGACCGTCACAGCAAGGTTGACGGCCGTGGACGCCGTATACGCATGCCAATAATATGCGCCGCCAGGGTGTTCCAGCTCACGCGCGAGTTAGGCCACAAGTCCGACGGTCAAACCATCGAGTGGCTCCTCCGTCAAGCCGAACCCTCCATCATAGCCGCCACCGGCACCGGCACCACCCCCGCCAGCTACTCCTCCGTCTCCGTCTCCGTCCGTGGCGCTAACTCCAACTCCCTCCCCTCCCCTTCCTCCACCTCTGACCACAAGCCTTCCTTGCTCGCTCCCACTCCCTTCATTCTCGGCAAGCGTATTCGCACCGACGATGATTCCTCCCCCAAAGACGACGCCGTTTCTGTTGGTTCTCTCGTTGGACCCGCTACCCCTGCTGGCTTGTGGGCCCTTCCTGGTCGACCTGATTTGGGACAATTTTGGAGCTTCGCCGCCGCCGCCGCTCCTCCGCCGGAAATGATGGTGCAGCCTGCCGCCATGTCGGTGTCTCAGCAACAACAGCAGCAGCAAGCGGCGTCTTTGTTCGTTCATCATCATCATCATCATCAGCAACAGCAGCAACAAGCCATGGGTGAAGCTTCGGCGGCGAGAGTGGGAAATTACCTTCCAGGGCATCTGAATTTGCTTGCTTCGTTGTCCGGTGGACCTGGAAATTCTGGTAGGAGAGACGATGAGACTCGTTGA 777 0.5907 MSSPDGTANGSMIDPQRQQQLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASYSSVSVSVRGANSNSLPSPSSTSDHKPSLLAPTPFILGKRIRTDDDSSPKDDAVSVGSLVGPATPAGLWALPGRPDLGQFWSFAAAAAPPPEMMVQPAAMSVSQQQQQQQAASLFVHHHHHHQQQQQQAMGEASAARVGNYLPGHLNLLASLSGGPGNSGRRDDETR* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03465 258 Pfam TCP family transcription factor 28 215 IPR017887 -
Rops6g03465 258 MobiDBLite consensus disorder prediction 200 225 - -
Rops6g03465 258 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 226 IPR005333 GO:0003700
Rops6g03465 258 MobiDBLite consensus disorder prediction 100 122 - -
Rops6g03465 258 MobiDBLite consensus disorder prediction 24 41 - -
Rops6g03465 258 ProSiteProfiles TCP domain profile. 28 82 IPR017887 -
Rops6g03465 258 MobiDBLite consensus disorder prediction 1 23 - -
Rops6g03465 258 MobiDBLite consensus disorder prediction 1 41 - -
Rops6g03465 258 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03465 Rops-Chr6 59340719 59342584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03465 7 258 TCP Transcription Factor Family AT5G23280 65.625 5.40e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops6g03465 TCP 2.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03465 K16221 - gmx:100799005 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03465 6 59340719 59342584 Rops6g03465 6 59340719 59342584 ECH