Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03462 ATGTCTTCCGGGGACGGCGACGGCGACGGAGGTAAGCTTTTCTTCTGCCACGTGTGCAGTCAGAGAGTTACCTGCTCCGATGACTCCGAACCTTTCTGCCCCATCTGCCTCGAAGGTTTCGTCGAAGAATATAACCCAAATCCTAATCCTAATCCCAACAACCCTAACCCTAACTTTGCATTCCGTTTCAACTCTGATCCCTCTTCTGATTCCAATTTCCCATTCCATCCCTTTTCATTGCTCCCTTTTTTACTTTCCTCTGCTTCAACCACTACCATCGATCTCCAAAACCCTCTATTCTTCTCGAATTCTCCCGGTCCCAGGACCCGACCCGAACCCGACATGTTCGACCCGGTCCTCTTCCTCCAGAACCACCTCCAAGGACTTCGAGCTGATGGTGCCAACATCCAATTCGAGATCAATCACCCTGCGGAACCCGGATTTCGTCTTCCGGCCAACATCGGCGATTACTTCGTCGGCCCCGGCCTCGAGCAATTGATTCAGCAGCTCGCTGAGAACGACCCGAACCGTTACGGCACTCCGCCGGCATCGAAAGATGCTGTCGAGAATCTTCCGACTGTGACCGTTGATGATGAGTTGTTGAACTCGGAATTGAACCAGTGTGCGGTTTGTCAGGACGAGTTCGAGAAGGGTTCGCAGGTGAAGCAAATGCCTTGCAAGCATGTGTATCATGATGAGTGCTTGATTCCATGGCTGAAATTGCATAACTCTTGCCCTGTTTGTCGATATGAATTGCCCACTGATGATGCTGATTATGAGAATCGGAGTAGGGGGAATGGTTCTGATGGGTCGAGGTCTGGTGGTAATGACAACGACGGTGGAAGCGGTGGCGATGGTGGAGGAGGAGGGGGAAATAGACCTGTTCATAGGACTTTTAGAATATCTTTGCGGTATCCTTTTGGTGCAGGTGACTCTGCTCAGGAAAGTGGTGAAAGGGGATTGGGGAATAGGCAAGAAGATTTGGATTGA 990 0.5081 MSSGDGDGDGGKLFFCHVCSQRVTCSDDSEPFCPICLEGFVEEYNPNPNPNPNNPNPNFAFRFNSDPSSDSNFPFHPFSLLPFLLSSASTTTIDLQNPLFFSNSPGPRTRPEPDMFDPVLFLQNHLQGLRADGANIQFEINHPAEPGFRLPANIGDYFVGPGLEQLIQQLAENDPNRYGTPPASKDAVENLPTVTVDDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHDECLIPWLKLHNSCPVCRYELPTDDADYENRSRGNGSDGSRSGGNDNDGGSGGDGGGGGGNRPVHRTFRISLRYPFGAGDSAQESGERGLGNRQEDLD* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03462 329 MobiDBLite consensus disorder prediction 256 329 - -
Rops6g03462 329 ProSiteProfiles Zinc finger RING-type profile. 208 249 IPR001841 -
Rops6g03462 329 FunFam E3 ubiquitin-protein ligase RING1-like 169 255 - -
Rops6g03462 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 253 - -
Rops6g03462 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 255 IPR013083 -
Rops6g03462 329 SUPERFAMILY RING/U-box 187 255 - -
Rops6g03462 329 SMART ring_2 208 248 IPR001841 -
Rops6g03462 329 Pfam Ring finger domain 206 249 IPR001841 -
Rops6g03462 329 Pfam zinc-ribbon 14 44 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03462 Rops-Chr6 59309176 59311108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03462 152 264 C3H Transcription Factor Family AT5G01980 49.558 1.34e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03462 K11982 - gmx:100785289 389.423