Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03453 ATGGAGAATGACACCACCGCCGCCACCACCATCAACAACAAAGTTGGTTCTGGAGAAGGAGGAGTCAAACCTAATAATCAGAGTCAAGAAGAAGAGCATTCGAATTTGAATGTCGAGGAACAAATGACTGAAAATTTGGAAGAAGATGAAGAAGATCGAGATGAAGGTGAAGAAGGAGAACCAACTGGATCTGCACCAAACCCTCGACAACCTTCTAGAACTCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCCCTTGCTCGAACCCTACAGGAACAGGAAAGGGCGTACATGATGCTGAGAATGAATAACGATGGAAGCGACTATGGAAGTTGGGAAGGTGGAAGCTATTTGCTTGATGATGGGGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGATGATGAAGATGAAGACGATGATAATGAGGAGGAATATGAGAATGAAGACGCATTTGATGTCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGCATTGACTTTGACCCTGATGTATTTTCTGGTGATGAAGCCTATGCAAGAGCATTACAAGAGGCCGAAGAGAGGGAAATGGCAGCTAGACTGTTGGCTCTTGCTGGGATAAATGATCTTTCATTATCAATTACAGGGGAGGCTGAGGAGGACATGGAGGAGCATGGTGGCAATTCTCAGGATGCATGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATTCTATTGCCTGTTTGCCTTCAGTCGAGTACAAGACCGGGAGTGATCAACATGGAAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAAGATGGTGACTCTTTGACAGCTCTTTCCTGTAAACATCTGTATCATCCTGAGTGCATTAACAATTGGTTGAAAATTAACAAGGTTTGTCCCGTTTGCAGTACTGAGGTATCTGCTTCTGGGAGCAAATAG 1017 0.4484 MENDTTAATTINNKVGSGEGGVKPNNQSQEEEHSNLNVEEQMTENLEEDEEDRDEGEEGEPTGSAPNPRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLLDDGDDFDDLHDGTDVDEDDDEDEDDDNEEEYENEDAFDVHAHASAGEHDNPSIDFDPDVFSGDEAYARALQEAEEREMAARLLALAGINDLSLSITGEAEEDMEEHGGNSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDSIACLPSVEYKTGSDQHGSNDSCVICRVDYEDGDSLTALSCKHLYHPECINNWLKINKVCPVCSTEVSASGSK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03453 338 MobiDBLite consensus disorder prediction 105 153 - -
Rops6g03453 338 MobiDBLite consensus disorder prediction 65 81 - -
Rops6g03453 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 335 IPR013083 -
Rops6g03453 338 FunFam E3 ubiquitin ligase BIG BROTHER-related 254 335 - -
Rops6g03453 338 SUPERFAMILY RING/U-box 279 333 - -
Rops6g03453 338 MobiDBLite consensus disorder prediction 1 32 - -
Rops6g03453 338 MobiDBLite consensus disorder prediction 42 58 - -
Rops6g03453 338 Pfam Ring finger domain 286 328 IPR001841 -
Rops6g03453 338 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 26 337 IPR043312 -
Rops6g03453 338 SMART ring_2 288 328 IPR001841 -
Rops6g03453 338 MobiDBLite consensus disorder prediction 1 82 - -
Rops6g03453 338 ProSiteProfiles Zinc finger RING-type profile. 288 329 IPR001841 -
Rops6g03453 338 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03453 Rops-Chr6 59268021 59282277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03453 62 209 C3H Transcription Factor Family AT3G19910 54.667 1.14e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03453 K19045 - gmx:100306465 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03453 6 59268021 59282277 Rops6g03453 6 59268021 59282277 ECH