Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03449 ATGGCGCGTGGAAGGAAGAAGCGGCAAGAGAACCCTGTCACAGAGGAACCCATTCCTCATCAAGAACCTCAAGAAACGATGAACTCAGCTGAAAACGGTGAAGGTTTGGGTAACAATGATGATAATGGGGGAGGAGGTTCTTCTTCTGTTCAAGTTGTTGTGAAAAAGAAGCGTGGCAGAAAGAGTAAAGCGGAAAAAGAGGCCTTGAAGAACATGTTCAAAGGGGTTGTTGCTACAGCAATGATTAAGAATGAACAAGAGGGCAACGTGGTGGAAAAGGAAGAAGCTGCAGAAGAAGATGACAATGACCAGAACTATGAGGGTAACAATGATGATAATGGGGAAGGAGGTTCTACTTCTGTTCAAGTTGTTGTGAAAAAGAAGCGTGGGAGAAAGAGTAAAGCGGAAAAAGAGGCCTTGAAGAACAAGTTAAAAGGGGTTGTTGCTACAGCCATGATTGAGAATGAACAAGAGGGTAATATGGTGGAAAAGGAAGAAGCTGCAGAAGAAGATGACAATGAGGAGAAAAGTGAGGGTAACAATGATGATAATGGGGAAGGCGGTTCTTCTTCTGTTCAAGTTGTTGTGAAAAAGAAGCGTGGGAGAAAGAGTAAAGCGGAAAAAGAGGCCTTAAAGAACATGTTAAAAGGGGTTACTGCTACAGCCATGGTTGAGAATGTGGTGGAAAAGGAAGAATCTGCAGAAGAGGATGACCATGAGGAGAACAGTGAGGGTATCGTCAAGAAGAGACGTGGTAGAAAGAGAAAGAGAAAGATTATCAAGAAAGATGTGTCTAGTTCTAAAGAAATGGTCCTTGTGAACAAGAGAGGTTCAAGGCGTAGAAATGCTGTGAGTGAAGGAAAGGTGGAAACTGATGTTTTGGAGGATCAGGATCAAGATCTTGGTGAATCTGAAATGCCTGCAGATTCTTCCGGGAGTGACATTCAGAAACGTTATAAACTTAGGAACCCTCCTAGAGAAACTAAACAGGAGAAGCCAAAAGTCAACAAGAAAAATGCTAAGTGGATTGAAGAGGAGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAAGGGCGAGGTAGTGAGGTGCACAAAATGTAAACGAAAAAGATTTTGCATACCCTGTATAAAGAATTGGTATCCTCGATTGAAAGAGGATGATATTGCTGAGGCATGTCCTGTGTGCCATGGTAATTGCAACTGCAAAGCATGCTTGCGATCTGGTGAACTTCTTAAAGAAGTGAAGGCAAATGTGGAAACCAACAAAGACAAGGAGGTTGAGCTCTGTAAGTATGTACTGAAAGGACTTCTTCCGTATTTAAGACAGTTGGATGAAGAGCAAATGATTGAGAAGGAGACAGAAGCTAAGAGACAAGGGCTCCCACTCTCTCAGCTAAAAATAGAAGAGGCAGGTTACTCTCAAGATGAGCGTGTGTACTGTGACAACTGCAAAACCTCAATATTTGATTACCACAGAAGCTGTACAAAATGCTCTTTTGACCTTTGTCTCATCTGTTGCCGTGAGCTTCGTACTGGGCAGCTTCTAGGTGGTGCAGATCCAATTGAGTTGGAGTTTGTCTTCAAAGGTCGTGGTTATCTGCATGGTGAAGAAGAAAATGAAAAGGTAAAAAGAAATGCATCACATGCAGATGCTGAGCCTGAGATTCACGAATGGTCAAGATCTGGGTGGCATGCGGATAGTGATGGTAGCATTCCTTGTCCAAAAGTCCATAATGAATGTGACCATGGTTTCCTTGAACTGAGAAGCATACTTCCTCCAAATTTAATTTCTGAGTTAGTATGTAAAGCAGAAGAACTAGCAGAAGCATATAAGCTTCACGATGCAGTTGAGACTCTTGATAACTGGTGTTCTTGTTTAAAGCTCGATAGAAATACAGATGATAGATATGATAATATGAGGGAGGCAGCTTTTCGTGAAGATTCCAGTGACAACTGTTTATACTGTCCTAGGGCTGTCGATCTACAGCAGGAGGATTTAAGACATTTTCAATGGCATTGGAGCAGAGGGGAGCCTGTAATTGTCAGCAATGTGCTTGAATGTTCATCTGGATTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATAACTAATACCAAGCATGGTCAACATTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGGAGAGATTAATATCCACCAATTCTTTACTGGGTATACAAATGGTCGTGAGGATTGGCTTGATTGGCCTCAGATACTGAAACTAAAAGATTGGCCCCCTTCTAATTTATTTGAGGAACGTTTGCCTCGTCATTGTGCTGAGTTCATATCTTCCTTGCCATATAAAGAATATACAGATCCTTACAGAGGTTCTCTTAACCTTGCTGTGAAGTTGCCCAAGGGTTGTATAAAGCCAGACATGGGGCCAAAAACATATATCGCTTATGGATTTGCTCAGGAGCTCGGGCGTGGTGATTCTGTGACCAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGAAATCTAAGCACATAACTGCCATTAAGAAATTGACTCCAAAGCATATTGAGCAAAACAGAAGGGAGCTACTTGGAGATAATCAGGATGGAGAAACTAATAGTGACATACTTGATAATTTGTTTTCTACAATATCTGCTTCAGAGAATCAAAATAGTGTTCAAGGCATGGAAAATGAAAGTGGACTATATGATGGGAAAGTGCTTGATCAGTTTCAGCAACATTCTGGTACTAAGGATGATGGTCTTTCATGTGGGCCTGAGCTCAAAGAGGTTGATGAAAACACAATGAAACAAGAAAATGGTATGCTGCTTGGGAGTGATGGTTTAGAAGGTGCTCTTTGGGATATTTTTCGGAGACAGGATGTACCTAAATTGCAGGAATATCTTAAGAAGCATTTCAAAGAGTTCAGACATGTCCATTGCTGTCCTTTAAAGCAGGTCATTCACCCCATCCACGATCAGACCTTTTATCTGACTATGGAGCATAAGAGGAAGCTGAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTGTCCAGAAGCTAGGAGATGCTGTTTTTATTCCAGCTGGTTGTCCTCATCAAGTCAGAAATCTAAAGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCACGCTTCCAATAAATCACAGGTCCACTGAGGACAAATTGGAGGTGAAGAAAATGACTATACATGCTATGCTTGATGTGGTGGGAACACTGGGAAAAGCAAGGTCTGGGGAAACGAAGGTTCCAAATGTATCTGAAACAGATTGA 3366 0.4192 MARGRKKRQENPVTEEPIPHQEPQETMNSAENGEGLGNNDDNGGGGSSSVQVVVKKKRGRKSKAEKEALKNMFKGVVATAMIKNEQEGNVVEKEEAAEEDDNDQNYEGNNDDNGEGGSTSVQVVVKKKRGRKSKAEKEALKNKLKGVVATAMIENEQEGNMVEKEEAAEEDDNEEKSEGNNDDNGEGGSSSVQVVVKKKRGRKSKAEKEALKNMLKGVTATAMVENVVEKEESAEEDDHEENSEGIVKKRRGRKRKRKIIKKDVSSSKEMVLVNKRGSRRRNAVSEGKVETDVLEDQDQDLGESEMPADSSGSDIQKRYKLRNPPRETKQEKPKVNKKNAKWIEEESLMCHQCQRNDKGEVVRCTKCKRKRFCIPCIKNWYPRLKEDDIAEACPVCHGNCNCKACLRSGELLKEVKANVETNKDKEVELCKYVLKGLLPYLRQLDEEQMIEKETEAKRQGLPLSQLKIEEAGYSQDERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRTGQLLGGADPIELEFVFKGRGYLHGEEENEKVKRNASHADAEPEIHEWSRSGWHADSDGSIPCPKVHNECDHGFLELRSILPPNLISELVCKAEELAEAYKLHDAVETLDNWCSCLKLDRNTDDRYDNMREAAFREDSSDNCLYCPRAVDLQQEDLRHFQWHWSRGEPVIVSNVLECSSGLSWEPLVMWRAFRQITNTKHGQHLDVKAIDCLDWCEGEINIHQFFTGYTNGREDWLDWPQILKLKDWPPSNLFEERLPRHCAEFISSLPYKEYTDPYRGSLNLAVKLPKGCIKPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLKSKHITAIKKLTPKHIEQNRRELLGDNQDGETNSDILDNLFSTISASENQNSVQGMENESGLYDGKVLDQFQQHSGTKDDGLSCGPELKEVDENTMKQENGMLLGSDGLEGALWDIFRRQDVPKLQEYLKKHFKEFRHVHCCPLKQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHRSTEDKLEVKKMTIHAMLDVVGTLGKARSGETKVPNVSETD* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03449 1121 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 78 1108 IPR045109 GO:0032454|GO:0033169
Rops6g03449 1121 MobiDBLite consensus disorder prediction 1 15 - -
Rops6g03449 1121 Gene3D Cupin 653 1083 - -
Rops6g03449 1121 MobiDBLite consensus disorder prediction 1 66 - -
Rops6g03449 1121 MobiDBLite consensus disorder prediction 82 337 - -
Rops6g03449 1121 SMART cupin_9 768 1074 IPR003347 -
Rops6g03449 1121 ProSiteProfiles Zinc finger RING-type profile. 350 397 IPR001841 -
Rops6g03449 1121 MobiDBLite consensus disorder prediction 21 49 - -
Rops6g03449 1121 SUPERFAMILY Clavaminate synthase-like 661 1096 - -
Rops6g03449 1121 ProSiteProfiles JmjC domain profile. 787 1074 IPR003347 -
Rops6g03449 1121 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 345 410 IPR018866 -
Rops6g03449 1121 MobiDBLite consensus disorder prediction 92 108 - -
Rops6g03449 1121 MobiDBLite consensus disorder prediction 315 337 - -
Rops6g03449 1121 Pfam JmjC domain, hydroxylase 955 1057 IPR003347 -
Rops6g03449 1121 MobiDBLite consensus disorder prediction 262 295 - -
Rops6g03449 1121 MobiDBLite consensus disorder prediction 163 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03449 Rops-Chr6 59204497 59218156 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops6g03449 JmjC 1.7e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03449 K15601 - gmx:100805723 1306.97