Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03444 ATGCAATCTATTAGAAAGTCCTTCAAATCTTATGGTTCCTATAATAAACACACCAGAAGGTTTTCCCCTACTGGAAACGCAGATTCCGAGAACGAACAACTCCCTATTCTCCAAGATCAAGAAACCCACCACCATAGCAGCAACCACTCTTCTCCAATGGCCGGAGATGTTGTCGTTAAGATTGACGACGGTGGTGGTGAGAACGTGCAGGGTAACAAGATCTGGAGAGAGTCTAGTTATGATTTCTGGCAGGACTCCGGTGACAATGCCCGTGAGGAGAGCTTTGCTTTCCAGCAGAAGGGTCTGCCGGAGGACCCGCCGTCGCAGCTGATCGGAAGATTCTTGCACAAGCAGAGGGCTTCCGGTGATATGGCGTTGGACATGGATTTGGAAATGGAGGAGCTTCAGCATGAGGGTGACGCTGATGGTGACGGTGACGGGAAGTTGACGCCGGTGGAGGAGTCTCCCACGGTGACCCACCGGGTTTCCAGGGAGCTCAAGGTCTCGTTTGAGGAACCAGCGTCGAATGTGATCGAGGTGGCAAATGATCCTGTTAGAAGAAGGCACAGCAAGGATTCGCCGTCGCTCGGAGAGTTTCAGAGGCCGCCGCATCCGCCGCAGCATCACGACCGTCGGAGGTCTCCGTCTCCGGCCGGCAATGGTGGTGATGGGGAGGTTGTGAGGTGCACCTCCAACGCTTCCTTCGAAAGGAACATTTCTATGCAGAGAAAGTCCAATTTGTTGAAAGCCAAAACCAGGTCCAGATTATTGGATCCTCCTGAGGAACTCGACAAGAGATCGGGTCGGGTCATGAAATCGGGGCAGATGTATTCCGGGATTTTGGGGAAGAAGAATGAGGAAGAGGAAGAGGATCCGTTTGCGGAGGAGGATCTTCCGGATGAGTTTACGAAGACCCATTTTAGCTTGTGGATTTTTCTTGAGTGGTTGAGCTTGATTTTGATCATTGGTTTATTGGTGACAACGCTTTGTGTTCCATTTTTAAGGGACAGGAATCTCTGGGAGCTCAGGTTATGGAAATGGGAGGTTATGATTCTGGTTCTAATATGTGGAAGGTTGGTTTCTGATTGGGTGATTAGGATTGCTGTGTTCTGCATTGAAAGGAATTTCCTTTTGAGGAAGAAGGTGCTTTATTTTGTGTATGGTGTGAAGAAAGCTGTTCAGAATTGCGTGTGGTTGGGCCTTGTTTTGATTGCATGGCATTTGTTGTTTGATAAGAGAGTTCAAAGAGAGACTAATGGTATTGTCCTTCCATATGTCACCAAGGTCTTGTTGTGTTTCTTGGTGGGTACTTTGGTTTGGTTGGTGAAAACTCTGATGGTTAAGGTTTTGGCTTCTTCTTTCCATGTTAGTACCTACTTTGATAGGATTCAAGATTCACTTTTTAATCAATTTGTGATTGAAACACTTTCTGGGCCACCTTTGGTTGAACTTCAAAAGGCTGAAGAAGAGGAGGAAAGGCTTGCTGATGAGGTTAGGAAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTCAGAGCAACTGCTTTCCCTACTGGCAAGAGTGGAAAGTTGAGGAGTGGAATGCTCCCTAAAAGCCCTAGAATAAGAAGCGGCAAGTTTTCAAGGCCACTTTCCAAGAAGTCAGATGATGGGAATGGGATAACTATTGATCACTTGCATAAGCTGAATCCAAAAAATATCTCTGCCTGGAATATGAAGAGGTTGATGAATATGGTAAGGCAGGGGACTCTTACTACATTAGATGAGCAGATACTTGATTCGTCTAATGATGATGAGAGTGCCACGCAAATTAGAAGCGAAAATGAGGCTAAAGCAGCGGCAAAGAAAATATTTCTGAATGTTGCTAGGCGTGGCTGCAGGTATATATACACAGAGGATTTGATGCGTTTCATGCGAGAAGATGAAGTTGCAAAAACCTTAAATCTCTTTGAAGGGGCGACTGATACTGGGAAAATCAGCAAAGCAGCCTTGAAGAACTGGGTGGTCAATGCGTTCAGGGAGAGGAGGGCACTTGCTTTGACATTGAATGACACCAAAACGGCAGTGAATAAACTTCATCGGATGCTCAATTTTTTGGTTGCCATTATCATACTGGTTATCTGGCTCTTGATATTGGAAATTGCCACCACCAAATTTCTTCTTTTTGTGAGCTCACAGCTTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAGACCGTATTCGAAGCAATCATTTTCTTGTTTGTCATGCACCCATTTGATGTGGGAGATAGGTGTGAAATTGATGGGATCCAGATGGTGGTAGAAGAAATGAACATATTGACAACCGTATTTCTGAGATATGATAATCAAAAGATTACGATCCCTAACAGTCTCCTTGCTACTAAGGCCATCCATAATTTCTACCGTAGTCCTGACATGGGAGATGCTGTTGAATTCTGTGTACATATATCCACCCCAGTTGAGAAGCTTTCACAAATGAAACACAGAATACAGAGTTACATTGATAACAAGAAGGAGCACTGGTACCCTTCACCTTTTATAGTCTTCAAGGATCATGAACAATTAAACATGGTGAGAATGGCAATCTGGCCAACTCACAGGATGAACTTCCAAGACATGGGAGAAAGATTTGTGAGGAGATCCTTATTGATTGAAGAGATGATCAAGATTTTCAGGGAGCTTGACATTCAGCACCGTCTCCTGCCCCTAGACATTAACGTTAGAGCTATGCCTACTACTTCTGATCGGCTTCCACCTAGTTGGGCAACAATCACAAACTGA 2790 0.4516 MQSIRKSFKSYGSYNKHTRRFSPTGNADSENEQLPILQDQETHHHSSNHSSPMAGDVVVKIDDGGGENVQGNKIWRESSYDFWQDSGDNAREESFAFQQKGLPEDPPSQLIGRFLHKQRASGDMALDMDLEMEELQHEGDADGDGDGKLTPVEESPTVTHRVSRELKVSFEEPASNVIEVANDPVRRRHSKDSPSLGEFQRPPHPPQHHDRRRSPSPAGNGGDGEVVRCTSNASFERNISMQRKSNLLKAKTRSRLLDPPEELDKRSGRVMKSGQMYSGILGKKNEEEEEDPFAEEDLPDEFTKTHFSLWIFLEWLSLILIIGLLVTTLCVPFLRDRNLWELRLWKWEVMILVLICGRLVSDWVIRIAVFCIERNFLLRKKVLYFVYGVKKAVQNCVWLGLVLIAWHLLFDKRVQRETNGIVLPYVTKVLLCFLVGTLVWLVKTLMVKVLASSFHVSTYFDRIQDSLFNQFVIETLSGPPLVELQKAEEEEERLADEVRKLQNAGVTIPPDLRATAFPTGKSGKLRSGMLPKSPRIRSGKFSRPLSKKSDDGNGITIDHLHKLNPKNISAWNMKRLMNMVRQGTLTTLDEQILDSSNDDESATQIRSENEAKAAAKKIFLNVARRGCRYIYTEDLMRFMREDEVAKTLNLFEGATDTGKISKAALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGIQMVVEEMNILTTVFLRYDNQKITIPNSLLATKAIHNFYRSPDMGDAVEFCVHISTPVEKLSQMKHRIQSYIDNKKEHWYPSPFIVFKDHEQLNMVRMAIWPTHRMNFQDMGERFVRRSLLIEEMIKIFRELDIQHRLLPLDINVRAMPTTSDRLPPSWATITN* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03444 929 MobiDBLite consensus disorder prediction 179 228 - -
Rops6g03444 929 FunFam Predicted mechanosensitive ion channel 754 803 - -
Rops6g03444 929 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 924 IPR016688 -
Rops6g03444 929 MobiDBLite consensus disorder prediction 1 36 - -
Rops6g03444 929 MobiDBLite consensus disorder prediction 138 163 - -
Rops6g03444 929 PIRSF Memb_At2g17000 27 929 IPR016688 -
Rops6g03444 929 Pfam Mechanosensitive ion channel 696 899 IPR006685 GO:0016020|GO:0055085
Rops6g03444 929 Gene3D - 754 803 IPR023408 -
Rops6g03444 929 SUPERFAMILY Sm-like ribonucleoproteins 744 803 IPR010920 -
Rops6g03444 929 Coils Coil 481 504 - -
Rops6g03444 929 MobiDBLite consensus disorder prediction 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03444 Rops-Chr6 59108236 59112856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03444 56 926 Mechanosensitive Ion Channel Family AT1G78610 57.814 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03444 K22048 - gmx:102665658 1456.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03444 6 59108236 59112856 Rops6g03444 6 59108236 59112856 ECH