Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03421 ATGGATGTACAATGGAAGTGCCCGTTTGAAAAGCTCGTGAATCACGTTCCAGATCCGTGTTCCTCACACACTCACGTCTCTCTTCTGCTTCAGATCAGGAAAATCGAAAACCACTGTTCTAAGATGGGTGTGGCTCGGAACATTCAAGAGATGGAGGAGGGTACCTTGGAGATAGGAATGGAATACAGAACTGTATCTGGAGTTGCTGGACCATTGGTCATTCTTGATAAAGTCAAGGGACCAAAATTTCAAGAGATTGTTAACATTCGTTTAGGAGATGGAACCACTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCCGTTGTTCAGGTATTTGAAGGTACATCAGGGATCGACAATAAATTTACAACCGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTCTCACTGGACATGCTTGGGCGTATATTTAATGGTTCTGGAAAACCAATTGACAATGGTCCACCAATTCTACCTGAGGCTTACTTAGATATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCCGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCCAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAACGAAATTGCTGCACAGATATGTCGTCAGGCTGGCTTAGTCAAGCGATTGGAGAAGTCTGATAATCTTCTTGAGGATGGAGATGAGGAAAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCCATGGAGAGAGTGACCCTTTTTCTTAATTTGGCAAATGATCCCACTATTGAGCGTATTATTACTCCTCGAATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCCGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCTGGACGACGTGGTTATCCTGGTTATATGTATACAGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAAGGGCGTAAAGGCTCTATTACACAGATTCCCATTTTAACCATGCCAAATGATGATATTACACATCCAACTCCTGACCTTACTGGATATATCACCGAGGGGCAGATATACATCGATAGGCAGCTGCATAATAGACAGATATACCCACCAATCAATGTCCTTCCATCGCTATCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACCAGAAGGGATCATTCTGATGTGTCCAACCAGCTCTATGCAAACTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATCTGGAATTTTTGGACAAGTTTGAGAGGAAGTTTGTCGCCCAGGGAGCTTATGACACCCGGAATATATTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATCTTCCCTCGCGAGCTTCTTCATCGTATTCCAGCCAAGACTCTTGACCAGTATTACAGCCGAGATGCCGGGAATTGA 1590 0.4396 MDVQWKCPFEKLVNHVPDPCSSHTHVSLLLQIRKIENHCSKMGVARNIQEMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEDGDEENFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03421 529 NCBIfam V-type ATPase subunit B 61 527 IPR005723 GO:0033180|GO:0046961|GO:1902600
Rops6g03421 529 CDD ATP-synt_V_A-type_beta_N 61 132 - -
Rops6g03421 529 Gene3D - 70 528 - -
Rops6g03421 529 CDD V_A-ATPase_B 133 426 - -
Rops6g03421 529 ProSitePatterns ATP synthase alpha and beta subunits signature. 409 418 IPR020003 GO:0005524
Rops6g03421 529 Pfam ATP synthase alpha/beta family, beta-barrel domain 65 131 IPR004100 GO:0046034|GO:1902600
Rops6g03421 529 PIRSF V-ATPsynth_beta/V-ATPase_B 52 529 IPR022879 -
Rops6g03421 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 424 IPR027417 -
Rops6g03421 529 Hamap V-type ATP synthase beta chain [atpB]. 59 527 IPR022879 -
Rops6g03421 529 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 46 526 IPR022879 -
Rops6g03421 529 FunFam V-type proton ATPase subunit B, brain 70 529 - -
Rops6g03421 529 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 188 418 IPR000194 GO:0005524
Rops6g03421 529 CDD ATP-synt_V_A-type_beta_C 428 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03421 Rops-Chr6 58854301 58862068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03421 35 529 Primary Pumps ATPases(2) AT4G38510 95.960 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03421 K02147 - gmx:100793764 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03421 6 58854301 58862068 Rops6g03421 6 58854301 58862068 ECH