Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03414 ATGGATTTTGATGAATATGATTACTTAGAGAAAACAGTTGAAAATCCTGAAGTTAATAAGGTGAAGCAAACAGCTAATGGTGGGGAAAGAACGGTGAAATCTGAAGAGAGAGGCCATAGTAGGAGTTCCAAGCGTAAGGATGGTGAGAAGGATGATGATGTTGATCGCCATTCAAAGCACTCAAAATCTGGAGATGGTTCTCGTGATTATGACAGGCATAAAGAAGAAGGATCATCTCGTCATCGTTCACGGTCCAGAGACGGAGACAGGGAGAAGGATCGGCTTAGAAACTCTGGGGGTGACAGGGATAGGAAGAAAGATAGGGACAGAACCAGTGAAGACAAGTCCAGAAGGGAAAGAGACAGGGACCGGGATCATGATCGTGACCGTGACCAAGAAAGAGGCAGAAGGGACCGTGGGAGTGAGAGTGAGAAGGAAAGGGAGAAGGAGCACTCACGACGAAGCAGAAGTAGATCAGAAAGGCATCAAAGTGATCTGGATGACAGAGAGAAAAGCCGTGACAGGGACCATAGAGACAGAGAACAAAGCCGGGATAGGGATAGGGATTACAGAGACAGAGAAAGGGTGAGGGAATCAAGGGAACGAGATCGAGAAAGCAGACAACATAAAGAGAAAAAGGAAGAAAAGGTAGAACCTGAGGCTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCGGATGAAAGAGACGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCTATAGCACTTTCAGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTGGTGGACCCACTGGACTTGTAGGCCTGCATTCTGGGGGTGCAAGAAAGCTGTATGTTGGCAATCTGCATGTCAGTATTACCGAAGCTGATCTTCGTGGGGTGTTCGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAGAAATGCCCAGAGCTTGAATGGTCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCTAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGTGGTGGCGGCTTGTCCCTGAATGCATGTTCTCGAGCTTTACTCATGCAGAAGTTGGATCGCAGTGGCACTGCATCAAGCATGGTTGGTTCCCTTGGTAATTCTGTTGTCAACAACACAGGCCTTAATCAACCGGCAACAGGAAACATACCAGAAGCAGCTCTTCTGGGAGCTGTGCCAGTTGGTTCTTCATTGGTTTCTGCCCTTTCTTCTGTTCCTCCAGTAGCTGGATTTCCAGGTGGAGGTCTCCAAGTTCCGACATCTACAATACCTTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCGAAAGATGAGAAGGAACCTGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCACTAAATTTGGGAAGTTAAATCACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTGCGATTTGAAGATACCCAATCTGCAGTAAGTGCACAGCGCGCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATATGAAGACAGATTTCCAGACAGCAGATAA 1869 0.4548 MDFDEYDYLEKTVENPEVNKVKQTANGGERTVKSEERGHSRSSKRKDGEKDDDVDRHSKHSKSGDGSRDYDRHKEEGSSRHRSRSRDGDREKDRLRNSGGDRDRKKDRDRTSEDKSRRERDRDRDHDRDRDQERGRRDRGSESEKEREKEHSRRSRSRSERHQSDLDDREKSRDRDHRDREQSRDRDRDYRDRERVRESRERDRESRQHKEKKEEKVEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVAGGPTGLVGLHSGGARKLYVGNLHVSITEADLRGVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMLEVGGNTGDFDDDEGGGGLSLNACSRALLMQKLDRSGTASSMVGSLGNSVVNNTGLNQPATGNIPEAALLGAVPVGSSLVSALSSVPPVAGFPGGGLQVPTSTIPSIDTIGVPSECLMLKNMFDPKDEKEPDFDLDIKEDVEAECTKFGKLNHIYVDKKSAGFVYLRFEDTQSAVSAQRALHGRWFAGKMITASFMVPQSYEDRFPDSR* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03414 622 SUPERFAMILY RNA-binding domain, RBD 330 430 IPR035979 GO:0003676
Rops6g03414 622 MobiDBLite consensus disorder prediction 1 17 - -
Rops6g03414 622 FunFam Splicing factor, CC1-like protein 523 622 - -
Rops6g03414 622 FunFam CC1-like, splicing factor 327 436 - -
Rops6g03414 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 334 403 IPR000504 GO:0003723
Rops6g03414 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 297 IPR000504 GO:0003723
Rops6g03414 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 552 604 IPR000504 GO:0003723
Rops6g03414 622 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 146 621 IPR006509 GO:0003723|GO:0005634|GO:0006397
Rops6g03414 622 SUPERFAMILY RNA-binding domain, RBD 524 608 IPR035979 GO:0003676
Rops6g03414 622 Gene3D - 523 622 IPR012677 -
Rops6g03414 622 CDD RRM3_RBM39_like 527 609 - -
Rops6g03414 622 CDD RRM1_RBM39_like 229 301 - -
Rops6g03414 622 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 424 546 IPR029123 -
Rops6g03414 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 528 611 IPR000504 GO:0003723
Rops6g03414 622 MobiDBLite consensus disorder prediction 29 227 - -
Rops6g03414 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 332 409 IPR000504 GO:0003723
Rops6g03414 622 FunFam RNA-binding protein 39 isoform X1 221 313 - -
Rops6g03414 622 NCBIfam splicing factor, CC1-like family 101 620 IPR006509 GO:0003723|GO:0005634|GO:0006397
Rops6g03414 622 Gene3D - 194 321 IPR012677 -
Rops6g03414 622 SMART rrm1_1 229 301 IPR000504 GO:0003723
Rops6g03414 622 SMART rrm1_1 333 405 IPR000504 GO:0003723
Rops6g03414 622 SMART rrm1_1 529 607 IPR000504 GO:0003723
Rops6g03414 622 SMART rrm2_1 333 405 IPR003954 GO:0003676
Rops6g03414 622 SMART rrm2_1 529 607 IPR003954 GO:0003676
Rops6g03414 622 SUPERFAMILY RNA-binding domain, RBD 221 318 IPR035979 GO:0003676
Rops6g03414 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 305 IPR000504 GO:0003723
Rops6g03414 622 MobiDBLite consensus disorder prediction 1 227 - -
Rops6g03414 622 Gene3D - 322 412 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03414 Rops-Chr6 58786798 58797467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03414 229 395 Eukaryotic Initiation Factors Gene Family AT4G34110 29.586 7.87e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03414 K13091 - gmx:100789839 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03414 6 58786798 58797467 Rops6g03414 6 58786798 58797467 ECH