Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03400 ATGGATCTCAGTTTTTGTTTCTTCTGCTTCTGGTTTGTTTGTTCTTCAATTTTGCTCTTTTTTGTCTTGCTTTTAGTCAAAGGAAGTAGTCATATCCATCTTTACCTTGGGAGTTCAAAGAGCAAGTTCTACTATCATCAGCCAGGTGACATGAACATCATCATGCAAAACTTAACTGAGAGACTAAGATCCCTTGTGGGTTTGAACGGTTGGGATTACTGTGTTTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGTTGTTGTGCTGGCTCTGAAAACAATGAAAATGCTGAGGAAGAACATCTTTGCCCTGTCTCTTCAGTGGCTTCATGCAGGGATGCCATGTTTCCACACCCCAGAACAAAGGCCTGTGATCTTCTTTCCCAACTTGCCACTTCCATACCCATAGATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCAAATTGGTTGAACTATTCCAATAGCTTGGATCCAAACATTCTGGAAGAAACAATTAATGGGACCCAGGTTTTGATTCCTGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTTCCTGAAGATCATCAGGTAATAGATTTTATCACAGGCCAGTGCATTGTCTTTTTGGAGCAGGAAGCAGTGAACCACTCAATCAGCACCAATATTGACGTAAATTCACTGAGCAACATGCAATCAAATCCACTTCTAGGGGATGAAAAAGAAGGGTATAATAGGAACAATTATTTTCAGCCATCAGAGACTTTGAGTCTCCCACATGAAATCTCTCTGGACCGCAACGGTCTCTGCAGTTCTCCGTTGAACTTCATGCAGCAGTTCAACTACAACCAACAAAACAAAATGAAAAATGATGCATTTTCTGAAGAATACCAAGGTTCCTTCCTTCATGACAAGCTAACCAACCCACTAAAATCCACCCCAGAAGAGGAGCATGATGCATATCAGAAATGCTTGATGAATGATACACAATATGTGGAGCCTTTGGACTCCAAGGAGAAGCAAGGAAACATTGTTGGTCGATCAGATTCAATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAATATAGGAGAAGGAATGGGAAAGGGAACCAGTCAAAAAACCTTGTAGCTGAGAGGAAGAGAAGGAAGAAGCTCAATGACAGGTTATATAACCTTCGTTCTTTGGTTCCAAGAATCTCAAAGCTAGATAGAGCATCCATTCTTGGGGATGCCATTGAGTTTGTGAAGGATTTGCAGAAGCAAGTGAAAGAACTTCAAGATGAGCTTGAGGAAAATTCAGACACAGGAGCTGAAAGCAACTGCATCAATGGTAATAATCAATATGTGGGTGTCCAACCAGATATTCCAAAAGAAGAACATGGTAACAACCAAACTGGGTTTCATGTGGGGACTTCAGGGAATGGCTATGTGTCAAAACAAAAGCAGGAAGATTCTAATGCGATTGAAAAGCAGACACAACAGATGGAGCCGCAAGTGGAAGTTGCTCTCATAGATGGGAATGAGTACTTTGTGAAGGTGTTCTGTGAGCACAGGCCTGGTGGGTTTGTGAAATTGATGGAGGCGTTGAACACTCTTGGCATGGATATAGTACATGCCACGAAAAAGGACAGTGAAATAGTTGAGGCCGAAGATGTGAGAGACTCACTATTAGAGCTTACGCGGAACCGATCAAGAGGGTGGACTCATGAGATGACAGCAAAATCAGAAAATGCTGTGGGAAGGGATCAACATCACCTCCACAACTCTCAAATGGGTGCCTATCATCCACACCAATTTCATAGTTAA 1827 0.4204 MDLSFCFFCFWFVCSSILLFFVLLLVKGSSHIHLYLGSSKSKFYYHQPGDMNIIMQNLTERLRSLVGLNGWDYCVYWKLSEDQRFLEWLGCCCAGSENNENAEEEHLCPVSSVASCRDAMFPHPRTKACDLLSQLATSIPIDSGIHAQTLLTNQPNWLNYSNSLDPNILEETINGTQVLIPVPGGLVELFVTKQVPEDHQVIDFITGQCIVFLEQEAVNHSISTNIDVNSLSNMQSNPLLGDEKEGYNRNNYFQPSETLSLPHEISLDRNGLCSSPLNFMQQFNYNQQNKMKNDAFSEEYQGSFLHDKLTNPLKSTPEEEHDAYQKCLMNDTQYVEPLDSKEKQGNIVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGAESNCINGNNQYVGVQPDIPKEEHGNNQTGFHVGTSGNGYVSKQKQEDSNAIEKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVKLMEALNTLGMDIVHATKKDSEIVEAEDVRDSLLELTRNRSRGWTHEMTAKSENAVGRDQHHLHNSQMGAYHPHQFHS* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03400 608 CDD bHLH_AtAMS_like 379 449 - -
Rops6g03400 608 MobiDBLite consensus disorder prediction 335 382 - -
Rops6g03400 608 Pfam Helix-loop-helix DNA-binding domain 383 426 IPR011598 GO:0046983
Rops6g03400 608 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 379 439 IPR036638 GO:0046983
Rops6g03400 608 Gene3D - 365 441 IPR036638 GO:0046983
Rops6g03400 608 Coils Coil 415 442 - -
Rops6g03400 608 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 58 205 IPR025610 -
Rops6g03400 608 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 425 IPR011598 GO:0046983
Rops6g03400 608 SMART finulus 382 431 IPR011598 GO:0046983
Rops6g03400 608 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 262 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03400 Rops-Chr6 58609368 58612609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03400 55 580 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.499 4.79e-139 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g03400 bHLH-MYC_N 2.7e-22 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03400 - - gmx:100798282 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03400 6 58609368 58612609 Rops6g03400 6 58609368 58612609 ECH