Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03395 ATGAGGTTGTTTTCTCTGAATGATTATTTGCCTCCTTTGGTGGAAACTTCTGCTCTTGTAATTGTGAGGCTATTCTATCTGAAGATTCTCGTGACATCAGATAGTAATCCACCTCTGTCGGTGGTGCAGAGTTCTAGCTTCAAGAAGAAAAGAAAATCTGCAACATCATCCAATGTTATCATCACGGGTGGTGCTGTGAAAATACCAAATATGTTTACAAGGAGATTTGGAGGTGATCTTTCAAATCCAGTGTTTGTGAAGCCTCCAGATGGCACTGAATGGAAAGTGTACTGGACAAAAGATAATGGTGAGGTTTGGTTCGTAAAGGGTTGGAAAGAATTTGCTGAAAATTACTCTCTAGATCATGGGTATTTAGTCTTGTTCAAATATGAAGGAACTTCCCAGTTTGATGTACTCATACTTGACCAGAGTACTATAGAAATAGACTATCCTTCATGTGATCCTTGTGATAAAAATGACAACCTTGATCAGAGTGATGATAAATCAGTTGAAATTTTGGATGAATGGCCAGATCAAAAGGCTAAACAAAAGTCGCCATTATTTTCTCCCCCAACTCATAAGAAAATGAGAGAGTTGTATTCTGAAGATGCTCCACAAGGCCCGTCTTTAACAAGCGAGAAGGCTACTCAAAGAACTTCATCATTGAATTGGCCAAAGGAAGCTAGAGCTCAGGAAGTAGCTGCAGAATTCATCTCATGCAATCCTTTTTTCACGGTTTCCATAAAGCCTTTACACCTGTTAGATAATCGGCTGGGTCTACCAGATTTGAAAGGTGTTATTGAGCACAAGGACATGTATGTGAAGCTGCAGGTTAGGAAAAGATCATGGAATGTGAAGTTGCTCCGTGGTTCTTTTTATCGCTTCTTCTCTGCCGGTTGGTCCTTGTTTGCAAAGGAACTTGAATTGCAACAAGGAGATGTTTGTGTCTTTGAACTCATAAACAGAGAAGATCCAGTTTTTGAAGTTCATGTGTTCAAATGTTGA 1005 0.395 MRLFSLNDYLPPLVETSALVIVRLFYLKILVTSDSNPPLSVVQSSSFKKKRKSATSSNVIITGGAVKIPNMFTRRFGGDLSNPVFVKPPDGTEWKVYWTKDNGEVWFVKGWKEFAENYSLDHGYLVLFKYEGTSQFDVLILDQSTIEIDYPSCDPCDKNDNLDQSDDKSVEILDEWPDQKAKQKSPLFSPPTHKKMRELYSEDAPQGPSLTSEKATQRTSSLNWPKEARAQEVAAEFISCNPFFTVSIKPLHLLDNRLGLPDLKGVIEHKDMYVKLQVRKRSWNVKLLRGSFYRFFSAGWSLFAKELELQQGDVCVFELINREDPVFEVHVFKC* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03395 334 MobiDBLite consensus disorder prediction 205 223 - -
Rops6g03395 334 CDD B3_DNA 242 333 IPR003340 GO:0003677
Rops6g03395 334 ProSiteProfiles B3 DNA-binding domain profile. 243 334 IPR003340 GO:0003677
Rops6g03395 334 ProSiteProfiles B3 DNA-binding domain profile. 51 144 IPR003340 GO:0003677
Rops6g03395 334 PANTHER B3 DOMAIN-CONTAINING 48 331 - -
Rops6g03395 334 MobiDBLite consensus disorder prediction 202 223 - -
Rops6g03395 334 CDD B3_DNA 55 142 IPR003340 GO:0003677
Rops6g03395 334 Gene3D - 224 334 IPR015300 -
Rops6g03395 334 Pfam B3 DNA binding domain 62 140 IPR003340 GO:0003677
Rops6g03395 334 Pfam B3 DNA binding domain 268 332 IPR003340 GO:0003677
Rops6g03395 334 SMART B3_2 50 144 IPR003340 GO:0003677
Rops6g03395 334 SMART B3_2 243 333 IPR003340 GO:0003677
Rops6g03395 334 SUPERFAMILY DNA-binding pseudobarrel domain 240 333 IPR015300 -
Rops6g03395 334 Gene3D - 39 145 IPR015300 -
Rops6g03395 334 SUPERFAMILY DNA-binding pseudobarrel domain 56 151 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03395 Rops-Chr6 58558923 58563642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03395 66 333 B3 DNA Binding Superfamily AT3G18990 28.972 3.11e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops6g03395 B3 1.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03395 - - gmx:102661781 326.25