Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03393 ATGGGTAGTTGTGGAAGAGAAGGAGCAGTGAGGCAGTATATAAGATCAAAGGTTCCTCGTTTGAGATGGACTCCTGAGCTGCACCGTTGCTTTGTTCATGCCATTGAGAGTCTTGGAGGTCATCACAAGGCTACCCCTAAGCTGGTTCTTCAGTTGATGGATGTTAAAGGGCTCACAATTTCACACGTCAAGAGCCATCTTCAGATGTATAGAAGCATGAGAGGTGAATTGGGCAGACAAGGTAGGACATCCTCCCATCATAGAAACCAATCTTTTGAAGAGCATGATGATGGTTGTGTTGATGAAGTGAATGATGTTGGTGTTCAATATTCTTGTTCAAAACCAATGGGTAGAGAATCTGATTCCTCCTTCTGCTACAGCAATTTCCCCTCAAAAAGAGCTAGAATCGAGACGAGGAGTTCCATCTCAGAGAGTCTGAAATGCAGCCAAAGAATGTGTGATACAGTGCCAAATCCGTACTGCTTTTATGATTATATGCAGCCCTTGGGTGAACAGAAAGAAATAAAGGAGTTTTGTGATGGTTTAAGATATTCCTCACCATTCCCTCTGCTACCAGATTTTGACAACCTCAGTTCATTCAAATGTCCAAAGCAAGAATCTGATTCCCTCCAGGTTAGTAAATTAAAGGATAGAAAGAGCACTTCACAACCAAATAATGTGCTTGTGAACACTGAGACAGCACATGGAGGAGATGAAGGTGCAGGAGGGTATGAGTTGTCATTGTCTCTCACATTGCCAAATCCTTCACCTCAGAGAAGTAATGCTTCTTCTGGCAGTGAGATCAGTGAGGCAATCTCATCATGCCCTGGGTTTAGCAACTACAAGGACTGCTCTAGTTCATCCACTGTCAAAGAAAGGATTAATTTAGACTTATCTTTAGCCATATGTGGCAATTGA 918 0.4259 MGSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIESLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGELGRQGRTSSHHRNQSFEEHDDGCVDEVNDVGVQYSCSKPMGRESDSSFCYSNFPSKRARIETRSSISESLKCSQRMCDTVPNPYCFYDYMQPLGEQKEIKEFCDGLRYSSPFPLLPDFDNLSSFKCPKQESDSLQVSKLKDRKSTSQPNNVLVNTETAHGGDEGAGGYELSLSLTLPNPSPQRSNASSGSEISEAISSCPGFSNYKDCSSSSTVKERINLDLSLAICGN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03393 305 MobiDBLite consensus disorder prediction 211 266 - -
Rops6g03393 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Rops6g03393 305 FunFam Myb family transcription factor 17 75 - -
Rops6g03393 305 MobiDBLite consensus disorder prediction 216 232 - -
Rops6g03393 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 104 IPR046955 GO:0003700
Rops6g03393 305 MobiDBLite consensus disorder prediction 249 266 - -
Rops6g03393 305 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Rops6g03393 305 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Rops6g03393 305 Gene3D - 18 74 - -
Rops6g03393 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03393 Rops-Chr6 58533752 58537707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03393 1 77 G2-like Transcription Factor Family AT1G14600 71.951 1.18e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops6g03393 Myb_DNA-binding 3.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03393 - - lja:Lj5g3v2241390.1 450.284