Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03388 ATGGCTTCAACAACAAAAACTCCTACCAAGTCTTTCCAAACTCCCTCCAAACCAAACCTCCGATCTCAATCAAATCTCAAATCCTCACCTGCTCTAACCCCAGTGACTCCACAATCCCAACCTTCTCGCAGATCCACGCGCTCAAGGTCTCTCCCTTTCAATTCTCCCAAACCTAGTGAAAATCAACCCCCAAATACGATACCGTCTCGTAGATCCATTAATTACACCGATGATTCCACCAAAGGCAGAAGAGGAAATGCTTCTAAAGCATCATATAAGAGAAATGGAAAAGGTCCAGTTGAAGTTTCATTCGCTCCGGCGTCGCCGGATCAATCGGAAACTAAGAAGAGAAAGAGGGAGAATGAGAGAACGGTTGTTACTAGAGCTATGGCTACGAGAAAAGGGAAAAAATCAGAGAATATGCAACAAACTAAACGTGTGTATTATAAGAAAGTGGTTTATGATGCGGGCGAGTTTGAAGTGGGGAATGATGTTTATGTGAAGAGGAGAGAAGATGCGAGTTCAGATGATGAAGATCCCGAAGTGGAAGAGTGTAGGATGTGTTTTTGTGTTGGTGATGAGATCATGATTGAGTGTGATGATTGTTTAGGTGGGTTTCATTTGAAATGCTTGAAGCCGCCCTTGAAGGATGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGGAAGATGGGTAAGGAGGTTAATTTTCCAAAGCCTCCGGAGGGTAAGAAACTCTCTAGGACAATGAGGCAGAAGCTTCTTTCCAGTGATTTGTGGGCTGCTCATATTGAGAGTATATGGAAAGAAGTAGATGGCAACTATTGGTGTCGGGTACGGTGGTATATAATCCCAGAAGAGACTTCTGTTGGGCGACAACCACATAACCTGAGAAGGGAGCTGTATCAAACCAATGATTTTGCAGACATTGAGATGGAGTCTGTCCTTAGACATTGCTATGTCATGACCCCCAAAGAGTATGATAAAGCTAGCAATGAGGGAGATGATGTTTTCTTACGTGAATATGAATATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGAGACGGACAGTGACAAAGACTGGAATCTTGACAACGAATCAGACTCTGATACAGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAAATGCACAATCTCAGCCATCAACAAGCCATCAGTTAGCAGCAAATCTGCGCAAGGGACGGTTCACCGGACTTCAGAAGATAGGCACAAAAAGAATTCCACAGCATATAAGGTCTCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTATTAGCATCGCTGCCTAAATCCTTACCTTGTAGAAATAAAGAAATGGAAGAGATATCTACATTTATTAAAGGTGCTATTTCTGACGATCAATGTTTGGGGCGTTGCCTCTACATTCATGGTGTTCCAGGAACTGGCAAGACAATGAGTGTACTAGCAGTGATGAGGAGTTTGAAGTCAGAAGTTGATGCTGGAACCATCAAACCCTACTGTTTTGTGGAGATTAATGGTCTGAAATTGGCATCAGCAGAGAATATTTATAGGGTCATATATGAGGCATTAAATGGCCACAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTAAATGAGAAGTTTGTAGAAGGGAAGAGAACTGGAGAAGAGGCTGACCGGCCATGTATCCTGCTAATTGATGAACTTGATCTTCTTGTGACCAGAAACCAGTCGGTTTTGTACAATATTCTTGACTGGCCTACCAAGCCACATTCCAAGCTAATTGTGATAGGGATAGCAAATACTATGGATCTTCCGGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCGTACAAAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCTATAGAGTTTGCTTCAAGAAAGGTTGCAGCGATCTCAGGAGATGCACGTCGTGCTTTGGAGATATGTAGACGTGCAGCTGAGATAGCAGATTATCGTATGAAGGCACTAAATTCAAATCCTGATTCTGTGACTGCAGGAAAGGGACTTGTTGGTATGGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTGATGAAAAACTCTTCCAGACTCAGCAAAATTTTCCTAACAGCTATGGTGCACGAGCTGTATAAAACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGACGGTTTCGCGTCTCTGTACCAGCAACGGAGAAGTGTTTCCTGGATATGATATCCTCCTGCAAGTTGGCTGTAAGCTGGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAGGTTGCAAAAATTGCAGCTCAATTTCCCGAGCGATGATGTGGCCTTTTCGTTGAGAGACTGCCAAGATCTACCTTGGTTGTCGAAGTATCTAATGTAG 2517 0.4303 MASTTKTPTKSFQTPSKPNLRSQSNLKSSPALTPVTPQSQPSRRSTRSRSLPFNSPKPSENQPPNTIPSRRSINYTDDSTKGRRGNASKASYKRNGKGPVEVSFAPASPDQSETKKRKRENERTVVTRAMATRKGKKSENMQQTKRVYYKKVVYDAGEFEVGNDVYVKRREDASSDDEDPEVEECRMCFCVGDEIMIECDDCLGGFHLKCLKPPLKDVPEGDWICGFCEARKMGKEVNFPKPPEGKKLSRTMRQKLLSSDLWAAHIESIWKEVDGNYWCRVRWYIIPEETSVGRQPHNLRRELYQTNDFADIEMESVLRHCYVMTPKEYDKASNEGDDVFLREYEYDIHWHSFKRLADIDNERENGEETDSDKDWNLDNESDSDTDEDVEYEEENIKNAQSQPSTSHQLAANLRKGRFTGLQKIGTKRIPQHIRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEISTFIKGAISDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLKSEVDAGTIKPYCFVEINGLKLASAENIYRVIYEALNGHRVSWKKALHLLNEKFVEGKRTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGVQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRMKALNSNPDSVTAGKGLVGMADVEAAIQEMFQAPHIQVMKNSSRLSKIFLTAMVHELYKTGMGETTFEKLAMTVSRLCTSNGEVFPGYDILLQVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVAFSLRDCQDLPWLSKYLM* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03388 838 MobiDBLite consensus disorder prediction 379 393 - -
Rops6g03388 838 ProSiteProfiles BAH domain profile. 240 357 IPR001025 GO:0003682
Rops6g03388 838 Gene3D - 437 634 IPR027417 -
Rops6g03388 838 Pfam ATPase family associated with various cellular activities (AAA) 486 631 IPR003959 GO:0005524|GO:0016887
Rops6g03388 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 693 IPR027417 -
Rops6g03388 838 MobiDBLite consensus disorder prediction 361 378 - -
Rops6g03388 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 239 IPR013083 -
Rops6g03388 838 ProSitePatterns Zinc finger PHD-type signature. 185 228 IPR019786 -
Rops6g03388 838 SMART PHD_3 187 229 IPR001965 -
Rops6g03388 838 FunFam Origin recognition complex subunit 1 634 726 - -
Rops6g03388 838 ProSiteProfiles Zinc finger PHD-type profile. 182 231 IPR019787 -
Rops6g03388 838 SUPERFAMILY FYVE/PHD zinc finger 172 234 IPR011011 -
Rops6g03388 838 SMART AAA_5 481 635 IPR003593 GO:0016887
Rops6g03388 838 Pfam AAA lid domain 659 692 IPR041083 -
Rops6g03388 838 Gene3D - 635 709 - -
Rops6g03388 838 Pfam PHD-finger 188 230 IPR019787 -
Rops6g03388 838 Pfam BAH domain 265 354 IPR001025 GO:0003682
Rops6g03388 838 FunFam Origin recognition complex subunit 1 180 247 - -
Rops6g03388 838 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 289 832 - -
Rops6g03388 838 MobiDBLite consensus disorder prediction 1 56 - -
Rops6g03388 838 Gene3D - 251 381 IPR043151 -
Rops6g03388 838 FunFam Origin recognition complex subunit 1 438 637 - -
Rops6g03388 838 FunFam Origin recognition complex subunit 1 248 440 - -
Rops6g03388 838 MobiDBLite consensus disorder prediction 361 407 - -
Rops6g03388 838 SMART BAH_4 216 357 IPR001025 GO:0003682
Rops6g03388 838 MobiDBLite consensus disorder prediction 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03388 Rops-Chr6 58420909 58427486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03388 1 837 Core DNA Replication Machinery Family AT4G14700 62.604 0.0 1041
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops6g03388 AAA 5.7e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03388 K02603 - gmx:100798547 1380.16