Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03382 ATGGCAGCATCGTCTTCCTCAGCACAACTCTTTGGATTCAGAGAAGAGGATCAGATTCAGCAACAGCATTCCTTGCCACCACCATCATCAACAACTCCAGCTGCACCACCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTCTGTCCTGAGCCCACGTGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCAAAGAAATATGCTGTTCAATCAGATTGGAAAGCCCATTCTAAAACCTGTGGCACTAGAGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGAAGAGACAGTTTCATCACCCACAGGGCCTTCTGTGATGCACTGGCTCAAGAGAGTGCAAGACAGCCACCAAGTGTATATGGAAGTGGTAGCGACATGTGTTTAGTCTTATCTCAAGTGGGTCCCCAAATGTCCAACATGCAGCAAGACCAGAATAACGAATCTACTGAACTCTTGAGACTCGGTGGTGGTGCCGGTCGAACCGGTCAATTCGACCACATTCTCCCACCACCAACCATTGCTTCATCCTTCAGAACTTCTCAGCATTCTCCACCTTCATTCTTCATGACTGAATCAAACCAAAACTACCACCCTGAACAAGATCATCAACAACAAGGGTTGGTGCAGAACAAGCCATTTCAAGGACTAATGCAATTGTCTGAACTTAACAATCATCATAACAATTCTCCATCACATGGTGCCAACCTCTTCAACCTTCCATTCCTTTCAAGTAACAACAACAACAACCCCTTCTCTGAACATTTGAACAGTGGCAATGGGAACAGTGGAGGTGGCAACAATGAAGGGAACAATTTCTTCACTGTAATGGGTGGTAACCAAACAATAGCAACTTCAAGCGCCCCTTCTCTTTTTAGCACTTCTCTTCAAAGCAACAACAACAACAATGCTATCTCTCACATGTCAGCAACTGCACTTCTTCAGAAAGCTGCACAAATGGGTGCAACTTCAAGCAGCAACACTGCCTCACTACTGAAAAGCTTTGGATCTAAACCTGATAATAACAGGCCAATGGTTGCAGCAAACTATGGTGGTAACATTTTTGGAGGGAGTAATGAACAGAACAACCTGCAAGAACTGATGAACTCTTCCATTTTCGAAACTGGGTCTTCTGGAGGGATTACTACTACAGGTTTTAGGGACCCAAAGTTGAGCATTGGAGGCTCTGATAGGCTCACTCGTGACTTTCTAGGTGTTGGTCAAATAGTGAGAAGCATGAGTGGTGGTGGAGGGGTTTCACAAAGAGAACAGCAACAGCAACATCAACATCAACATCAGCAACATGGTGGTTTTAACTTGAGTTCTTTGGAGGCTGAAACAAATGCTGCGCCGTCAGGCCAATCTTTCGGAGGTGGAGGGAATTTTCAGTGA 1650 0.4545 MAASSSSAQLFGFREEDQIQQQHSLPPPSSTTPAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPSVYGSGSDMCLVLSQVGPQMSNMQQDQNNESTELLRLGGGAGRTGQFDHILPPPTIASSFRTSQHSPPSFFMTESNQNYHPEQDHQQQGLVQNKPFQGLMQLSELNNHHNNSPSHGANLFNLPFLSSNNNNNPFSEHLNSGNGNSGGGNNEGNNFFTVMGGNQTIATSSAPSLFSTSLQSNNNNNAISHMSATALLQKAAQMGATSSSNTASLLKSFGSKPDNNRPMVAANYGGNIFGGSNEQNNLQELMNSSIFETGSSGGITTTGFRDPKLSIGGSDRLTRDFLGVGQIVRSMSGGGGVSQREQQQQHQHQHQQHGGFNLSSLEAETNAAPSGQSFGGGGNFQ* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03382 549 MobiDBLite consensus disorder prediction 335 356 - -
Rops6g03382 549 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Rops6g03382 549 MobiDBLite consensus disorder prediction 500 522 - -
Rops6g03382 549 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Rops6g03382 549 SMART c2h2final6 144 164 IPR013087 -
Rops6g03382 549 SMART c2h2final6 109 139 IPR013087 -
Rops6g03382 549 SMART c2h2final6 68 90 IPR013087 -
Rops6g03382 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Rops6g03382 549 MobiDBLite consensus disorder prediction 1 53 - -
Rops6g03382 549 Gene3D Classic Zinc Finger 122 201 - -
Rops6g03382 549 Gene3D Classic Zinc Finger 47 116 - -
Rops6g03382 549 FunFam protein indeterminate-domain 12-like 47 115 - -
Rops6g03382 549 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Rops6g03382 549 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Rops6g03382 549 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 518 IPR031140 -
Rops6g03382 549 MobiDBLite consensus disorder prediction 1 28 - -
Rops6g03382 549 MobiDBLite consensus disorder prediction 498 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03382 Rops-Chr6 58357964 58363862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03382 38 522 IDZ Gene Family AT2G02070 52.075 4.78e-138 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g03382 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03382 K25870 - gmx:100799389 619.387