Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03379 ATGAGGCTTCCGGAGCCTCTCAGGGCGGCTGTCTCTGCCTCCGCCGGCAACAACAATCCTTTTCACATAACCCCAAACTCAGTTTCTTTTCTTCCAAATTTTCGTTTCAAGATGCAGATCTTCGTGAAAGCTATGACTGGCAAGACCATCACCCTTGAGGTGGAAAGTTCAGATACCATTGACAATGTTAAAGCCAAGATTCAAGATAAGGAAGAGACCTCACCTGACCAACAAAGGCTCATATTTGCTGGTAAGCAATTGAAGGATGGTCGCACTCTTGCAGATTACAACATTCAAAAGGAGTCCACCCTTCACCTTGTGCTTCACTAG 330 0.4576 MRLPEPLRAAVSASAGNNNPFHITPNSVSFLPNFRFKMQIFVKAMTGKTITLEVESSDTIDNVKAKIQDKEETSPDQQRLIFAGKQLKDGRTLADYNIQKESTLHLVLH* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03379 109 ProSiteProfiles Ubiquitin domain profile. 38 109 IPR000626 GO:0005515
Rops6g03379 109 Pfam Ubiquitin family 40 109 IPR000626 GO:0005515
Rops6g03379 109 FunFam Polyubiquitin 10 38 109 - -
Rops6g03379 109 PANTHER UBIQUITIN 38 108 - -
Rops6g03379 109 PRINTS Ubiquitin signature 48 68 IPR019956 -
Rops6g03379 109 PRINTS Ubiquitin signature 69 89 IPR019956 -
Rops6g03379 109 PRINTS Ubiquitin signature 90 109 IPR019956 -
Rops6g03379 109 SMART ubq_7 38 109 IPR000626 GO:0005515
Rops6g03379 109 SUPERFAMILY Ubiquitin-like 25 108 IPR029071 -
Rops6g03379 109 Gene3D - 33 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03379 Rops-Chr6 58321064 58321393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03379 38 108 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 91.549 3.33e-42 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03379 - K08770 han:110936586 136.732