Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03362 ATGGGACCCGAAGCTCTTCTTCCAAAATGGGCATCTCAACCTTGCATCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTCTTAGGGCCTATGGTCTATGGTTGCTTGTACTGTGCTCGCTCCTACCAGAACACCCTCCCTACTTTGAGTTTTGCAGATTCTAAGACACTAAAAGAAGAGAAGAGGGAAGAATTATTTGAAAATTTAAAAGGCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCAAGGGAGCTCTCTGCAAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGACTCTGCCATGGGCCTCATTGATAGGGTACTAAAAATGGGAGTGCTTTTAACTGAGGTCTATATAGATACAGTTGGAGATGCAGGGAAGTATGAAATGAAGCTGTCGAAAAGTTTTCCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACAAGGGACCAAGCTCTAAGAGACTGGGTGCTTGATGAGACTGCTGAAAACATGCACAGGAACTTTGGCTCTGGATATCCTGGAGATCCCCAAACCAAGTCTTGGCTAGAACATCACAAACATTCCATCTTTGGATTTCCAACATTGGTCCGATTTAGTTGGGGAACCTGCACCACTTATTTTAAAGATATTGCGGAAGTCTTATGGGAGTCTGACAAATTGGATGAAGATGGTGGCAGCAATAATAGTAATGGAAAGCGGCAATTGAAATTAAGCAATGTGGGTTTCACTACATCCAAGAGGAGAAGTGAAGAAATAGAATCAAGTGGCCCGCAGGAACCATTTGGTGGCCGACAGTTAAGTTTAAAATCTCGAGTTTCTCTGCACAATGACAAATCTGTGGTAACAGTGATTCTGATGAACATTCTTGGTTTGAATGGCTGTTACCAAATTCACATGTATTCCCCTAATATAAGGCTATAA 993 0.4199 MGPEALLPKWASQPCIMGIDEAGRGPVLGPMVYGCLYCARSYQNTLPTLSFADSKTLKEEKREELFENLKGNDSIGWAVDVIDPRELSAKMLKKNKINLNEISHDSAMGLIDRVLKMGVLLTEVYIDTVGDAGKYEMKLSKSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDQALRDWVLDETAENMHRNFGSGYPGDPQTKSWLEHHKHSIFGFPTLVRFSWGTCTTYFKDIAEVLWESDKLDEDGGSNNSNGKRQLKLSNVGFTTSKRRSEEIESSGPQEPFGGRQLSLKSRVSLHNDKSVVTVILMNILGLNGCYQIHMYSPNIRL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03362 330 CDD RNase_HII_eukaryota_like 17 233 - -
Rops6g03362 330 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Rops6g03362 330 Gene3D - 4 186 IPR036397 GO:0003676
Rops6g03362 330 MobiDBLite consensus disorder prediction 251 269 - -
Rops6g03362 330 NCBIfam ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Rops6g03362 330 FunFam Ribonuclease 188 235 - -
Rops6g03362 330 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Rops6g03362 330 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Rops6g03362 330 MobiDBLite consensus disorder prediction 245 288 - -
Rops6g03362 330 FunFam Ribonuclease 3 186 - -
Rops6g03362 330 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 282 IPR001352 GO:0003723|GO:0004523
Rops6g03362 330 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03362 1 280 Core DNA Replication Machinery Family AT2G25100 67.500 3.03e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03362 K10743 - gmx:100779875 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03362 6 58147722 58151267 Rops6g03362 6 58147722 58151267 ECH