Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03354 ATGTTTCGGGAGAACAGTGGCATAGCCACCACCACCACGACGCGGTGGCCGACTCAGCCGCCACAACCGAGTCAGTGGACTCGTTACCATGATAAGCTCTTCGAGCGAGCTCTATTGACCGTGCCGGAGGACCAGCCGGACCGGTGGGAGAAGATCGCCGAGCAGGTTCCCGGTAAGTCGGCGGAGGAGGTAAGGGAACACTACGAGGCTTTGGTTCACGACGTGTTTGAGATCGATTCGGGTCGGGTCGAGGTGCCGAGTTACGACGATGACTCGGCGGCGGGTGTTGGATTGTCTTCGTGGGATTCTTCTAATCAGATCTCTTTTGGGTCCAAACCTAAACAAGGTGAGAACGAGAGGAAGAAAGGGACACCTTGGACTGAAGAGGAACACAGGCTGTTTCTCATTGGGCTCAGCAAATTTGGGAAGGGAGATTGGAGAAGCATTTCAAGAAATGTTGTTATGACAAGAACACCAACTCAAGTAGCTAGCCATGCCCAAAAGTACTTCCTTCGCCAGAATTCAGTGAAGAAAGAGAGGAAAAGATCAAGCATCCATGACATAACCACAGTGGATAGTAACTCAGTGCCTGTGCCCATTGATCAGAATTGGGTTCCTCCTCCAGGTGATTCAGTTCAGCAGTCACAAGAAATGCAGCAATACCCATCAAACAATTTGCAAGATCAAATGGATAGATTTGGGTATTCAAACTATGGCTTTGAAATGTAA 729 0.4966 MFRENSGIATTTTTRWPTQPPQPSQWTRYHDKLFERALLTVPEDQPDRWEKIAEQVPGKSAEEVREHYEALVHDVFEIDSGRVEVPSYDDDSAAGVGLSSWDSSNQISFGSKPKQGENERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVMTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGDSVQQSQEMQQYPSNNLQDQMDRFGYSNYGFEM* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03354 242 ProSiteProfiles SANT domain profile. 121 174 IPR017884 -
Rops6g03354 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 174 IPR017930 -
Rops6g03354 242 SMART sant 122 172 IPR001005 -
Rops6g03354 242 SMART sant 22 74 IPR001005 -
Rops6g03354 242 MobiDBLite consensus disorder prediction 204 229 - -
Rops6g03354 242 SUPERFAMILY Homeodomain-like 24 80 IPR009057 -
Rops6g03354 242 CDD SANT 125 170 IPR001005 -
Rops6g03354 242 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 21 233 IPR043363 -
Rops6g03354 242 CDD SANT 26 72 IPR001005 -
Rops6g03354 242 FunFam transcription factor MYB1R1 124 175 - -
Rops6g03354 242 MobiDBLite consensus disorder prediction 207 229 - -
Rops6g03354 242 ProSiteProfiles Myb-like domain profile. 24 72 IPR001005 -
Rops6g03354 242 ProSiteProfiles Myb-like domain profile. 118 170 IPR001005 -
Rops6g03354 242 NCBIfam myb-like DNA-binding domain, SHAQKYF class 121 173 IPR006447 GO:0003677
Rops6g03354 242 MobiDBLite consensus disorder prediction 1 26 - -
Rops6g03354 242 SUPERFAMILY Homeodomain-like 120 175 IPR009057 -
Rops6g03354 242 Gene3D - 124 176 - -
Rops6g03354 242 Pfam Myb-like DNA-binding domain 125 170 IPR001005 -
Rops6g03354 242 Pfam Myb-like DNA-binding domain 25 68 IPR001005 -
Rops6g03354 242 MobiDBLite consensus disorder prediction 104 126 - -
Rops6g03354 242 Gene3D - 21 85 - -
Rops6g03354 242 FunFam Transcription factor SRM1 19 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03354 Rops-Chr6 58041949 58043825 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g03354 Myb_DNA-binding 4.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03354 - - gmx:547481 394.815