Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03350 ATGGGAAAGAAAGTGTTGAAGCTACCTTCTCTTTTCAAAACCAAGGAAGCACCACCAAGAAAGCATCATCCATGGCAGTTTTTACCCTCTTGTGGCCACCCAAAGACCCTTTCTTTCAGAGGTGGAGATGACATCTTCAAGACAGTTAACTCTGTATTTTTTGACCCTTCAGAGGGCACTATTGAAACTCCAAAGTCTTGGTTCACCACCTCATCTGAATCTGCAAGCTTCTCAACAGAATCAGATGAATATTGCTACAATGATGGTGAGTCTTTGGAGATGTTGGTACGTGGGGTGAGGTCAGAAAGGCTGTTTTTTGAACCAGGTGACACAAGCTCCATCTTGGAGAAAGCTAAGGCTAGTGGATTTCCATTTAAAGAAAGTGTGGTGTTAGCTATGGAGTCAGAGGATCCATATGAGGATTTTAGGAGATCAATGGAGGAGATGGTTGAGTCTCATGGAGTAAAAGATTGGGAGGGTTTGGAAGAGCTTTTGAGTTGGTATTTAAGGGTAAATGGTAAGAAAAATCATGGGTTCATAGTGGGTGCTTTTGTGGATTTACTCATAAGTATAGCAGCTTCTAATTCTAACTTTTCTTCTGATTCAACTTCATATTCTTCTGCTGTTTCTTCTTTTGCTTCTTCACCGTTGTATCTAACTGAGGGTCAGAATGAGATTATTGAGCTTGAGCATGAAGATATTGTAACATCTTAG 714 0.4062 MGKKVLKLPSLFKTKEAPPRKHHPWQFLPSCGHPKTLSFRGGDDIFKTVNSVFFDPSEGTIETPKSWFTTSSESASFSTESDEYCYNDGESLEMLVRGVRSERLFFEPGDTSSILEKAKASGFPFKESVVLAMESEDPYEDFRRSMEEMVESHGVKDWEGLEELLSWYLRVNGKKNHGFIVGAFVDLLISIAASNSNFSSDSTSYSSAVSSFASSPLYLTEGQNEIIELEHEDIVTS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03350 237 Pfam Transcriptional repressor, ovate 135 191 IPR006458 -
Rops6g03350 237 NCBIfam uncharacterized plant-specific domain TIGR01568 129 191 IPR006458 -
Rops6g03350 237 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 71 191 IPR038933 GO:0045892
Rops6g03350 237 ProSiteProfiles OVATE domain profile. 131 190 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03350 Rops-Chr6 57975864 57976874 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Rops6g03350 Ovate 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03350 - - gmx:100527123 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03535 8 75126885 75127673 Rops6g03350 6 57975864 57976874 ECH
Rops6g03350 6 57975864 57976874 Rops6g03350 6 57975864 57976874 ECH